RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 ZBTB44Q8NCP5 570 aa17.43■□□□□ 0.38
USP39-202ENST00000409025 ANKK1Q8NFD2 765 aa17.43■□□□□ 0.38
USP39-202ENST00000409025 DNAJA4Q8WW22 397 aaPredicted RBP17.43■□□□□ 0.38
USP39-202ENST00000409025 WWTR1Q9GZV5 400 aa17.43■□□□□ 0.38
USP39-202ENST00000409025 HHATLQ9HCP6 504 aa17.43■□□□□ 0.38
USP39-202ENST00000409025 MEPEQ9NQ76 525 aaPredicted RBP17.43■□□□□ 0.38
USP39-202ENST00000409025 LAMA1P25391 3075 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 IRGMA1A4Y4 181 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 TO15178 435 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 ADRA2AP08913 450 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 UBL4AP11441 157 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 TBXA2RP21731 343 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 IL12BP29460 328 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 GPR143P51810 404 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 NR0B1P51843 470 aaKnown RBP17.42■□□□□ 0.38
USP39-202ENST00000409025 MLLT10P55197 1068 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 TMEM44Q2T9K0 475 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 KLHL22Q53GT1 634 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 FNDC7Q5VTL7 733 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 LINC00114Q6XXX2 140 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 PRR22Q8IZ63 422 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 GATSQ8NAP1 163 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 FAM71CQ8NEG0 241 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 PHOSPHO1Q8TCT1 267 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 ADOQ96SZ5 270 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 PHOX2BQ99453 314 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 UBQLN3Q9H347 655 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 IL20RAQ9UHF4 553 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 ERGIC3Q9Y282 383 aa17.42■□□□□ 0.38
USP39-202ENST00000409025 KDM4EB2RXH2 506 aaPredicted RBP17.41■□□□□ 0.38
USP39-202ENST00000409025 D6RAR5 112 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 GTPBP1O00178 669 aaKnown RBP17.41■□□□□ 0.38
USP39-202ENST00000409025 SP9P0CG40 484 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 FUT1P19526 365 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 MED22Q15528 200 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 ARMCX4Q5H9R4 360 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 RNLSQ5VYX0 342 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 OVCH1Q7RTY7 1134 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 SLC34A3Q8N130 599 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 HSPBAP1Q96EW2 488 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 NRSN2Q9GZP1 204 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 OCIAD1Q9NX40 245 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 CDC14CA4D256 554 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 IDSB3KWA1 339 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 NTN3O00634 580 aaPredicted RBP17.41■□□□□ 0.38
USP39-202ENST00000409025 HCN1O60741 890 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 RFPL3O75679 317 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 RAB36O95755 333 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 ONECUT2O95948 504 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 GRK5P34947 590 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 TRA2AQ13595 282 aaKnown RBP eCLIP17.41■□□□□ 0.38
USP39-202ENST00000409025 CD226Q15762 336 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 ANKRD37Q7Z713 158 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 OR13C2Q8NGS9 318 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 METTL21AQ8WXB1 218 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 RFKQ969G6 155 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 APMAPQ9HDC9 416 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 EXOSC3Q9NQT5 275 aaKnown RBP17.41■□□□□ 0.38
USP39-202ENST00000409025 DIMT1Q9UNQ2 313 aaKnown RBP17.41■□□□□ 0.38
USP39-202ENST00000409025 SIGLEC7Q9Y286 467 aa17.41■□□□□ 0.38
USP39-202ENST00000409025 ZNF264O43296 627 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 ALOX12BO75342 701 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 HSMCR30P0CW71 290 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 FGF5P12034 268 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 FXYD6P3P58550 94 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 LSM3P62310 102 aaKnown RBP17.4■□□□□ 0.38
USP39-202ENST00000409025 PLCXD2Q0VAA5 305 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 IL11RAQ14626 422 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 ZNF385CQ66K41 422 aaPredicted RBP17.4■□□□□ 0.38
USP39-202ENST00000409025 SMARCD3Q6STE5 483 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 SLC46A3Q7Z3Q1 461 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 LSRQ86X29 649 aaPredicted RBP17.4■□□□□ 0.38
USP39-202ENST00000409025 CACTIN-AS1Q8N1I8 211 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 C17orf47Q8NEP4 570 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 OR52I1Q8NGK6 324 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 RNFT2Q96EX2 444 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 OR5M11Q96RB7 305 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 SMOC1Q9H4F8 434 aa17.4■□□□□ 0.38
USP39-202ENST00000409025 MRPS18AQ9NVS2 196 aaKnown RBP17.4■□□□□ 0.38
USP39-202ENST00000409025 A0A087WUJ7 227 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 TSPAN2O60636 221 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 ICOSLGO75144 302 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 FOXL2P58012 376 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 CRYZQ08257 329 aaKnown RBP17.39■□□□□ 0.37
USP39-202ENST00000409025 RAB40BQ12829 278 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 SKP2Q13309 424 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 WBP2NLQ6ICG8 309 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 ZNF441Q8N8Z8 693 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 MGLLQ99685 303 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 MND1Q9BWT6 205 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 IGHV3-20A0A0C4DH32 117 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 M0R3G1 203 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 BHLHE40O14503 412 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 PTP4A3O75365 173 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 NGFRP08138 427 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 MPLP40238 635 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 MTNR1AP48039 350 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 CCR4P51679 360 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 EMP2P54851 167 aa17.39■□□□□ 0.37
USP39-202ENST00000409025 CDH11P55287 796 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms