RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SPRR3Q9UBC9 169 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 B4GALT7Q9UBV7 327 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 USP22Q9UPT9 525 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 IGKV1D-42A0A075B6H8 117 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 A0A087WUJ7 227 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 IGHMP01871 453 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 PGCP20142 388 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 CEACAM8P31997 349 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 PRKAG1P54619 331 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 CASP9P55211 416 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 MS4A2Q01362 244 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 SELENBP1Q13228 472 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 FHL1Q13642 323 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 INPP5JQ15735 1006 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 CYBRD1Q53TN4 286 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 EMC4Q5J8M3 183 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 RPS26P11Q5JNZ5 115 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 ABLIM2Q6H8Q1 611 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 GHDCQ8N2G8 530 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 DOK4Q8TEW6 326 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 GEMIN6Q8WXD5 167 aaKnown RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 C3orf49Q96BT1 292 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 PYURFQ96I23 114 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 ZFP3Q96NJ6 502 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 KCTD14Q9BQ13 255 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 ECSITQ9BQ95 431 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 PIGQQ9BRB3 760 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 TACO1Q9BSH4 297 aaKnown RBP6.34□□□□□ -1.39
LIMA1-202ENST00000394943 YIPF4Q9BSR8 244 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 PTDSS2Q9BVG9 487 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 GABARAPL1Q9H0R8 117 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 OR10A4Q9H209 315 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 WDR70Q9NW82 654 aa6.34□□□□□ -1.39
LIMA1-202ENST00000394943 A0A1W2PRQ8 180 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 TMEM247A6NEH6 219 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 AHRRA9YTQ3 701 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 ACOT7O00154 380 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 NDUFB5O43674 189 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 CHP2O43745 196 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 NME6O75414 186 aaPredicted RBP6.34□□□□□ -1.4
LIMA1-202ENST00000394943 IL18BPO95998 194 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 GPIP06744 558 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 CRHP06850 196 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 DGCR6Q14129 220 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF311Q5JNZ3 666 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 ANGPTL8Q6UXH0 198 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 ADGRG3Q86Y34 549 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 ULK2Q8IYT8 1036 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 PRR22Q8IZ63 422 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 ADGRG5Q8IZF4 528 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 RNF113BQ8IZP6 322 aaKnown RBP6.34□□□□□ -1.4
LIMA1-202ENST00000394943 DNAJA4Q8WW22 397 aaPredicted RBP6.34□□□□□ -1.4
LIMA1-202ENST00000394943 CNOT9Q92600 299 aaKnown RBP6.34□□□□□ -1.4
LIMA1-202ENST00000394943 SLCO4A1Q96BD0 722 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 MPP4Q96JB8 637 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 PRRC1Q96M27 445 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 CDRT15Q96T59 188 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 WFDC6Q9BQY6 131 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 GALNT9Q9HCQ5 603 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 MKLN1Q9UL63 735 aa6.34□□□□□ -1.4
LIMA1-202ENST00000394943 ZZEF1O43149 2961 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 A0A1W2PNV4 684 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 CFAP73A6NFT4 308 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 A8MUI8 341 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 FFAR1O14842 300 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 TPST1O60507 370 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 WDR1O75083 606 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 PNMTP11086 282 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 PEPDP12955 493 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 ATP6V1B2P21281 511 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 TIMP3P35625 211 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 POLR2HP52434 150 aaKnown RBP6.33□□□□□ -1.4
LIMA1-202ENST00000394943 RIPPLY2Q5TAB7 128 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 BICRALQ6AI39 1079 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF770Q6IQ21 691 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-202ENST00000394943 CBLN3Q6UW01 205 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 THUMPD3Q9BV44 507 aaKnown RBP6.33□□□□□ -1.4
LIMA1-202ENST00000394943 METTL7AQ9H8H3 244 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 CCM2LQ9NUG4 571 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-202ENST00000394943 PPP4R1LQ9P1A2 415 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 SLC7A8Q9UHI5 535 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 ZNF232Q9UNY5 417 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 HDGFL3Q9Y3E1 203 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 CENPBD1B2RD01 187 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 DNASE1L1P49184 302 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 SUCLG1P53597 346 aaKnown RBP6.33□□□□□ -1.4
LIMA1-202ENST00000394943 RPS4XP62701 263 aaKnown RBP6.33□□□□□ -1.4
LIMA1-202ENST00000394943 PPIAP62937 165 aaKnown RBP6.33□□□□□ -1.4
LIMA1-202ENST00000394943 EGR4Q05215 589 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 CYP51A1Q16850 503 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 EIF2S3LQ2VIR3 472 aaKnown RBP6.33□□□□□ -1.4
LIMA1-202ENST00000394943 FBXL19-AS1Q494R0 122 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 GPAT3Q53EU6 434 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 NSUN5P2Q63ZY6 315 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 GLYATQ6IB77 296 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 LACC1Q8IV20 430 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 PM20D2Q8IYS1 436 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 TMEM234Q8WY98 164 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 NRBF2Q96F24 287 aa6.33□□□□□ -1.4
LIMA1-202ENST00000394943 UGT2B28Q9BY64 529 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms