RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 BMXP51813 675 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 AKR1C2P52895 323 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ADPRHP54922 357 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 POLE2P56282 527 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SH3BP2P78314 561 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 IL5RAQ01344 420 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 GTF2H2Q13888 395 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SLC5A9Q2M3M2 681 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 PRTGQ2VWP7 1150 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 STEAP1BQ6NZ63 245 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 GTF2H2CQ6P1K8 395 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NLRP8Q86W28 1048 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SPAG16Q8N0X2 631 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 OR5B17Q8NGF7 314 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 OR6F1Q8NGZ6 308 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 OR10A6Q8NH74 314 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 RBPMSQ93062 196 aaKnown RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 TMEM41AQ96HV5 264 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 FUCA2Q9BTY2 467 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 MMP25Q9NPA2 562 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 MBD2Q9UBB5 411 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CNOT11Q9UKZ1 510 aaKnown RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 IGHV1OR15-9A0A0B4J2B8 117 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 MEGF11A6BM72 1044 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TRIM49BA6NDI0 452 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 IQCF5A8MTL0 148 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 A8MV72 311 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 HOXA3O43365 443 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 SUSD5O60279 629 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 GABRG2P18507 467 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NBL1P41271 181 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CLINT1Q14677 625 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 MBTPS1Q14703 1052 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TMEM119Q4V9L6 283 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ACER2Q5QJU3 275 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ZNF684Q5T5D7 378 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 UBAP2Q5T6F2 1119 aaKnown RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 CREB3L2Q70SY1 520 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 MDGA2Q7Z553 956 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 P2RY8Q86VZ1 359 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 GRHL3Q8TE85 626 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 MYDGFQ969H8 173 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 P2RY11Q96G91 374 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ZNF649Q9BS31 505 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TSPAN10Q9H1Z9 355 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 ZFP64Q9NPA5 681 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 KCNIP2Q9NS61 270 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CLN8Q9UBY8 286 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 LRRC42Q9Y546 428 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 LIPGQ9Y5X9 500 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CDH10Q9Y6N8 788 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SESN1Q9Y6P5 492 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 COL2A1P02458 1487 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 SETBP1Q9Y6X0 1596 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 DEPDC5O75140 1603 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SPTY2D1-AS1A0A0U1RR47 76 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 PSMD9O00233 223 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TCF21O43680 179 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CD33P20138 364 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 FASP25445 335 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 AOAHP28039 575 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 GNG2P59768 71 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 OGDHQ02218 1023 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SLC25A30Q5SVS4 291 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CCNJQ5T5M9 372 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CPZQ66K79 652 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 BRICD5Q6PL45 260 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 KANSL1Q7Z3B3 1105 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TMPRSS9Q7Z410 1059 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ZDHHC13Q8IUH4 622 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 D2HGDHQ8N465 521 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 DTWD1Q8N5C7 304 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 UXS1Q8NBZ7 420 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 LILRB4Q8NHJ6 448 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 PSMF1Q92530 271 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SEMA4DQ92854 862 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SLC7A6OSQ96CW6 309 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 MED30Q96HR3 178 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ZNF347Q96SE7 839 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CEP41Q9BYV8 373 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SLC26A1Q9H2B4 701 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NT5DC2Q9H857 520 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 RLIMQ9NVW2 624 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TEX10Q9NXF1 929 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 PDE10AQ9Y233 779 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 VDAC3Q9Y277 283 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ATG4BQ9Y4P1 393 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TRBC2A0A5B9 178 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SLC22A31A6NKX4 558 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 OR52A4PA6NMU1 304 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ZNF879B4DU55 563 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 PIRO00625 290 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ZNF195O14628 629 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CRTAPO75718 401 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 RAF1P04049 648 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SNHG28P0DPA3 235 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 HOXA6P31267 233 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SELENBP1Q13228 472 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SLAMF1Q13291 335 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NR1I3Q14994 352 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms