RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NPIPA5A0A0B4J1W7 369 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 NPIPA7E9PJI5 369 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 CSO75390 466 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 NPIPA8P0DM63 369 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 BMP1P13497 986 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 PEA15Q15121 130 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 BATFQ16520 125 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 CTU2Q2VPK5 515 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF322Q6U7Q0 402 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 HAVCR2Q8TDQ0 301 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 NINJ1Q92982 152 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 C2orf42Q9NWW7 574 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 CLEC2DQ9UHP7 191 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 TRAV27A0A087WT01 109 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 A0A1W2PP55 124 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 TSTD3H0UI37 97 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 FBXO24O75426 580 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 TSPAN31Q12999 210 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 GPR50Q13585 617 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 HTR4Q13639 388 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 ELOAQ14241 798 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 KIAA1143Q96AT1 154 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 MCCC2Q9HCC0 563 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 A0A0D9SG52 128 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 FAM227AF5H4B4 570 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 LATO43561 262 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 UBL3O95164 117 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 IFNA10P01566 189 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 VEGFCP49767 419 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 ETV1P50549 477 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 CLDN12P56749 244 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 DEFA6Q01524 100 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 ARL6IP1Q15041 203 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 RFPL4BQ6ZWI9 263 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF679Q8IYX0 411 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 WDSUB1Q8N9V3 476 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 FIBINQ8TAL6 211 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 TLR9Q9NR96 1032 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 TUBG2Q9NRH3 451 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 RNF215Q9Y6U7 377 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 DRGXA6NNA5 263 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF705FA8MVS1 300 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 SRPX2O60687 465 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF705DP0CH99 300 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF705BP0CI00 300 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 TMEM225BP0DP42 221 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 MEF2DQ14814 521 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 RBMS2Q15434 407 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 SIAH3Q8IW03 269 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 GLB1L2Q8IW92 636 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 FNDC9Q8TBE3 224 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 ATG4BQ9Y4P1 393 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 LTBP4Q8N2S1 1624 aa18.32■□□□□ 0.52
CCDC88B-202ENST00000356786 M0QZQ0 153 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 C1QBP02746 253 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 ENDOUP21128 410 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 AKR1C2P52895 323 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 TAS2R19P59542 299 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 FXYD4P59646 89 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 ENTPD8Q5MY95 495 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 RNF111Q6ZNA4 994 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 BCDIN3DQ7Z5W3 292 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 BPIFB2Q8N4F0 458 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 C16orf58Q96GQ5 468 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 EMC7Q9NPA0 242 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 ICKQ9UPZ9 632 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 RPH3AQ9Y2J0 694 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 LTBQ06643 244 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 IRF4Q15306 451 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 SFXN4Q6P4A7 337 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 VRK2Q86Y07 508 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 AVL9Q8NBF6 648 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 KHSRPQ92945 711 aaKnown RBP eCLIP18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 ENY2Q9NPA8 101 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 DIMT1Q9UNQ2 313 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF480Q8WV37 535 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 KLHL42Q9P2K6 505 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF705GA8MUZ8 300 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 RPS2P15880 293 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 ERVFC1P60507 584 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 SEC22AQ96IW7 307 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 ST6GALNAC5Q9BVH7 336 aa18.31■□□□□ 0.52
CCDC88B-202ENST00000356786 SLC9B1P1A6NJY1 282 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 LALBAP00709 142 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 CCR6P51684 374 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 RASGRP3Q8IV61 690 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 ACOT4Q8N9L9 421 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 THAP3Q8WTV1 239 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 ZNF582Q96NG8 517 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 C1GALT1Q9NS00 363 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 REV1Q9UBZ9 1251 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 POLHQ9Y253 713 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 STRCQ7RTU9 1775 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 ACOD1A6NK06 481 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 CRTAPO75718 401 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 FGF18O76093 207 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 S100A11P31949 105 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 PPT1P50897 306 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 DYNC2LI1Q8TCX1 351 aa18.3■□□□□ 0.52
CCDC88B-202ENST00000356786 SLC38A5Q8WUX1 472 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms