RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 GDF2Q9UK05 429 aaPredicted RBP10.05□□□□□ -0.8
RTN3-204ENST00000354497 DTNAQ9Y4J8 743 aa10.05□□□□□ -0.8
RTN3-204ENST00000354497 ASB4Q9Y574 426 aa10.05□□□□□ -0.8
RTN3-204ENST00000354497 CR1P17927 2039 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 A0A1W2PP18 115 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 PGRMC2O15173 223 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 SSX4O60224 188 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 REM1O75628 298 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 PAHP00439 452 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 PLGP00747 810 aaPredicted RBP10.04□□□□□ -0.8
RTN3-204ENST00000354497 EPORP19235 508 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 GGT5P36269 586 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 EEFSECP57772 596 aaKnown RBP10.04□□□□□ -0.8
RTN3-204ENST00000354497 PRR20EP86478 221 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 PRR20CP86479 221 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 PRR20DP86480 221 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 PRR20BP86481 221 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 PRR20AP86496 221 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 HMGCS1Q01581 520 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 GNA13Q14344 377 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 ZNF846Q147U1 533 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 EXOSC7Q15024 291 aaKnown RBP10.04□□□□□ -0.8
RTN3-204ENST00000354497 PON3Q15166 354 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 TMEM81Q6P7N7 255 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 CCDC137Q6PK04 289 aaKnown RBP10.04□□□□□ -0.8
RTN3-204ENST00000354497 HDDC2Q7Z4H3 204 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 MTDHQ86UE4 582 aaKnown RBP10.04□□□□□ -0.8
RTN3-204ENST00000354497 C17orf47Q8NEP4 570 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 SMAP2Q8WU79 429 aaPredicted RBP10.04□□□□□ -0.8
RTN3-204ENST00000354497 S100ZQ8WXG8 99 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 NEUROG1Q92886 237 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 LCORQ96JN0 433 aaPredicted RBP10.04□□□□□ -0.8
RTN3-204ENST00000354497 RHNO1Q9BSD3 238 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 TMEM204Q9BSN7 226 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 NAT9Q9BTE0 207 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 PRRG4Q9BZD6 226 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 WDR12Q9GZL7 423 aaKnown RBP10.04□□□□□ -0.8
RTN3-204ENST00000354497 NEK6Q9HC98 313 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 KCNK9Q9NPC2 374 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 SLC7A8Q9UHI5 535 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 CLEC4AQ9UMR7 237 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 EMC9Q9Y3B6 208 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 RNF115Q9Y4L5 304 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 PSAT1Q9Y617 370 aa10.04□□□□□ -0.8
RTN3-204ENST00000354497 USF3Q68DE3 2245 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 MED12Q93074 2177 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 HEATR5AQ86XA9 2040 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 IGHV4-30-2A0A087WSY4 118 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 A0A0A6YYD5 115 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 ISPDA4D126 451 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 H3BML4 177 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 OVOL3O00110 214 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 UBFD1O14562 309 aaKnown RBP10.03□□□□□ -0.8
RTN3-204ENST00000354497 PDPK1O15530 556 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 H6PDO95479 791 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 ECDO95905 644 aaPredicted RBP10.03□□□□□ -0.8
RTN3-204ENST00000354497 ALDOAP04075 364 aaKnown RBP10.03□□□□□ -0.8
RTN3-204ENST00000354497 ZNF16P17020 682 aaPredicted RBP10.03□□□□□ -0.8
RTN3-204ENST00000354497 HK1P19367 917 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 ELK3P41970 407 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 CLK3P49761 638 aaKnown RBP10.03□□□□□ -0.8
RTN3-204ENST00000354497 XKP51811 444 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 BMXP51813 675 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 SUCLG1P53597 346 aaKnown RBP10.03□□□□□ -0.8
RTN3-204ENST00000354497 CASP9P55211 416 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 OR4D1Q15615 310 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 SGCBQ16585 318 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 TMEM249Q2WGJ8 235 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 ZNF600Q6ZNG1 722 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 IL17RELQ6ZVW7 336 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 FAM214BQ7L5A3 538 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 LRRC70Q7Z2Q7 622 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 MILR1Q7Z6M3 343 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 ZC3HC1Q86WB0 502 aaKnown RBP10.03□□□□□ -0.8
RTN3-204ENST00000354497 NUDT13Q86X67 352 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 ASCC1Q8N9N2 400 aaKnown RBP10.03□□□□□ -0.8
RTN3-204ENST00000354497 OR4K14Q8NGD5 310 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 OR5M1Q8NGP8 315 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 FBXO25Q8TCJ0 367 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 TMBIM1Q969X1 311 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 ISOC1Q96CN7 298 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 APOPT1Q96IL0 206 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 COL21A1Q96P44 957 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 COQ7Q99807 217 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 CD244Q9BZW8 370 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 DERL2Q9GZP9 239 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 ALG2Q9H553 416 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 CAB39LQ9H9S4 337 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 RNF122Q9H9V4 155 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 BARX1Q9HBU1 254 aaPredicted RBP10.03□□□□□ -0.8
RTN3-204ENST00000354497 FANCFQ9NPI8 374 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 MBD2Q9UBB5 411 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 TAGLN3Q9UI15 199 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 MED12LQ86YW9 2145 aa10.03□□□□□ -0.8
RTN3-204ENST00000354497 A0A087WXM4 84 aa10.02□□□□□ -0.81
RTN3-204ENST00000354497 FAM234BA2RU67 622 aa10.02□□□□□ -0.81
RTN3-204ENST00000354497 C17orf51A8MQB3 221 aa10.02□□□□□ -0.81
RTN3-204ENST00000354497 FAM25AB3EWG3 89 aa10.02□□□□□ -0.81
RTN3-204ENST00000354497 FAM25CB3EWG5 89 aa10.02□□□□□ -0.81
RTN3-204ENST00000354497 FAM25GB3EWG6 89 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms