RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 FBXL21Q9UKT6 434 aa20.14■□□□□ 0.81
SHMT1-202ENST00000352886 SIRT4Q9Y6E7 314 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-202ENST00000352886 A0A0B4J2E0 115 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 A0A1B0GX12 115 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 DAPL1A0PJW8 107 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 RNF13O43567 381 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 ADAM11O75078 769 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 NR4A2P43354 598 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 BDH1Q02338 343 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 BCL2A1Q16548 175 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 ARMC6Q6NXE6 501 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 GATAD2AQ86YP4 633 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 OR4N2Q8NGD1 307 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 RBMX2Q9Y388 322 aaKnown RBP20.13■□□□□ 0.81
SHMT1-202ENST00000352886 USP34Q70CQ2 3546 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 SPTY2D1-AS1A0A0U1RR47 76 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 CHP2O43745 196 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 CTSEP14091 401 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 APEX1P27695 318 aaKnown RBP20.13■□□□□ 0.81
SHMT1-202ENST00000352886 EMDP50402 254 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 CTBP2P56545 445 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 C17orf50Q8WW18 174 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 SEMA6CQ9H3T2 930 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 MALT1Q9UDY8 824 aa20.13■□□□□ 0.81
SHMT1-202ENST00000352886 A0A1B0GWA3 101 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 GTPBP1O00178 669 aaKnown RBP20.12■□□□□ 0.81
SHMT1-202ENST00000352886 SEC14L5O43304 696 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 THEGLP0DJG4 465 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 NOS3P29474 1203 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 LTBRP36941 435 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 FZD2Q14332 565 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 OR6F1Q8NGZ6 308 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 HOXB13Q92826 284 aaPredicted RBP20.12■□□□□ 0.81
SHMT1-202ENST00000352886 TEAD3Q99594 435 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 RNF32Q9H0A6 362 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 MARCH7Q9H992 704 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 POMT2Q9UKY4 750 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 NDRG2Q9UN36 371 aaKnown RBP20.12■□□□□ 0.81
SHMT1-202ENST00000352886 CYP8B1Q9UNU6 501 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.12■□□□□ 0.81
SHMT1-202ENST00000352886 SLC22A31A6NKX4 558 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 HCN1O60741 890 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 MRPL3P09001 348 aaKnown RBP20.12■□□□□ 0.81
SHMT1-202ENST00000352886 CLUP10909 449 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 S1PR1P21453 382 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 DNAJC5GQ8N7S2 189 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 AVL9Q8NBF6 648 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 FOLH1BQ9HBA9 442 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 TRPV5Q9NQA5 729 aa20.12■□□□□ 0.81
SHMT1-202ENST00000352886 GON4LQ3T8J9 2241 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 A0A0A6YYC8 382 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-202ENST00000352886 CCDC182A6NF36 153 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 C10orf142B7Z368 130 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 I3L1I5 382 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-202ENST00000352886 CDC123O75794 336 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-202ENST00000352886 RGS9O75916 674 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-202ENST00000352886 PPP1R3DO95685 299 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 IGKV1D-16P01601 117 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 KRT8P05787 483 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 GALP22466 123 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 CCINQ13939 588 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 GALEQ14376 348 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 ZNHIT3Q15649 155 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-202ENST00000352886 OAFQ86UD1 273 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 UBE2J2Q8N2K1 259 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 ARHGEF39Q8N4T4 335 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 SCAIQ8N9R8 606 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 OR4C6Q8NH72 309 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 TOE1Q96GM8 510 aaKnown RBP20.11■□□□□ 0.81
SHMT1-202ENST00000352886 TRIM36Q9NQ86 728 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 HCN3Q9P1Z3 774 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 ZNF221Q9UK13 617 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 SLC35A3Q9Y2D2 325 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 RIIAD1A6NNX1 92 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 HRKO00198 91 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 PTP4A3O75365 173 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 NGFRP08138 427 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 IL9P15248 144 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 CSTF1Q05048 431 aaKnown RBP20.11■□□□□ 0.81
SHMT1-202ENST00000352886 CRMP1Q14194 572 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 P2RY14Q15391 338 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 KIAA0895LQ68EN5 471 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 C19orf47Q8N9M1 422 aaKnown RBP20.11■□□□□ 0.81
SHMT1-202ENST00000352886 CYB561A3Q8NBI2 242 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 ZDHHC1Q8WTX9 485 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 LMF2Q9BU23 707 aaKnown RBP20.11■□□□□ 0.81
SHMT1-202ENST00000352886 KCNN2Q9H2S1 579 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 PPP1R3EQ9H7J1 279 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 NEK6Q9HC98 313 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 DNAJB12Q9NXW2 375 aaKnown RBP20.11■□□□□ 0.81
SHMT1-202ENST00000352886 FBXL4Q9UKA2 621 aa20.11■□□□□ 0.81
SHMT1-202ENST00000352886 MEIOCA2RUB1 952 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 B4DGG1 531 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 TGFBR3LH3BV60 316 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 PLA2G10O15496 165 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 ACAA2P42765 397 aaKnown RBP20.1■□□□□ 0.81
SHMT1-202ENST00000352886 ALG10BQ5I7T1 473 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 Q8N402 240 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 RIT1Q92963 219 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 SENP5Q96HI0 755 aaPredicted RBP20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms