RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MED4Q9NPJ6 270 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 NCBP2LA6PVI3 153 aaKnown RBP7.78□□□□□ -1.16
HMGB1-203ENST00000341423 TRAPPC2LH3BP13 241 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 NXPH2O95156 264 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 PRB1P04280 392 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 SLC35E2BP0CK96 405 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 CD59P13987 128 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 PIGAP37287 484 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 GDF5P43026 501 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 KIR2DL1P43626 348 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-203ENST00000341423 SNTB2Q13425 540 aaKnown RBP7.78□□□□□ -1.16
HMGB1-203ENST00000341423 NKG7Q16617 165 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 PPP1R3AQ16821 1122 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 UGT8Q16880 541 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 SPINK14Q6IE38 97 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 OR10X1Q8NGY0 326 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 ST8SIA2Q92186 375 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 OR10A4Q9H209 315 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 A0A0G2JMP0 313 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 A0A0X1KG70 313 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 ZNF264O43296 627 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 PLIN3O60664 434 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 MAOAP21397 527 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 PTAFRP25105 342 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 KLF3P57682 345 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-203ENST00000341423 WDR93Q6P2C0 686 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 TMEM17Q86X19 198 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 OR4M2Q8NGB6 313 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 OR4C13Q8NGP0 309 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 CENPNQ96H22 339 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-203ENST00000341423 CTSFQ9UBX1 484 aa7.78□□□□□ -1.16
HMGB1-203ENST00000341423 GPC6Q9Y625 555 aaPredicted RBP7.78□□□□□ -1.16
HMGB1-203ENST00000341423 TMEM120BA0PK00 339 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 OTOL1A6NHN0 477 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 TIMM23O14925 209 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 HOXC4P09017 264 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 COX4I1P13073 169 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 PRKCAP17252 672 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 TAS2R39P59534 338 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 POU3F1Q03052 451 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 GLO1Q04760 184 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 CLEC14AQ86T13 490 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 SYNPRQ8TBG9 265 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 ZPLD1Q8TCW7 415 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 WBP2Q969T9 261 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 NXNL1Q96CM4 212 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF768Q9H5H4 540 aaKnown RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 TCF7L1Q9HCS4 588 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 THAP1Q9NVV9 213 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 STEAP1Q9UHE8 339 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 PEAK1Q9H792 1746 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 PRAMEF27A3QJZ7 478 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 CENPBD1B2RD01 187 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 CREBL2O60519 120 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 DRD5P21918 477 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 NFYBP25208 207 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 DSCR4P56555 118 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 IL5RAQ01344 420 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 IFI44LQ53G44 452 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 CPZQ66K79 652 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 GALNT10Q86SR1 603 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 MAML2Q8IZL2 1156 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 LILRA2Q8N149 483 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 ZMYND19Q96E35 227 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 ALPK1Q96QP1 1244 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 RANBP9Q96S59 729 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF416Q9BWM5 594 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 SLC22A4Q9H015 551 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 FBXO34Q9NWN3 711 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 C1RLQ9NZP8 487 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF221Q9UK13 617 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 NFS1Q9Y697 457 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 THSD7AQ9UPZ6 1657 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 A0A1W2PPM1 405 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 SAGE2PA6NJ88 616 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF487B1APH4 448 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 SLC35E2P0CK97 266 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 TIA1P31483 386 aaKnown RBP eCLIP7.77□□□□□ -1.175e-7■□□□□ 8.1
HMGB1-203ENST00000341423 MVKQ03426 396 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 RSU1Q15404 277 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 METRNLQ641Q3 311 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 ANKRD46Q86W74 232 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 LINC00471Q8N535 108 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 JAGN1Q8N5M9 183 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 RNASE6Q93091 150 aaKnown RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 AURKBQ96GD4 344 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 ISCUQ9H1K1 167 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 METTL17Q9H7H0 456 aaPredicted RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 RYDENQ9NUL5 291 aaKnown RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 PDE5AO76074 875 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 CEACAM5P06731 702 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 PKLRP30613 574 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 STARP49675 285 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 TMEM64Q6YI46 380 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 OR1L3Q8NH93 324 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 WDR54Q9H977 334 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 FN3KRPQ9HA64 309 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 SAP30LQ9HAJ7 183 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 UFSP2Q9NUQ7 469 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 CLN8Q9UBY8 286 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms