RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 C2orf72A6NCS6 295 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 C4orf51C9J302 202 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 PROS1P07225 676 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 ACP2P11117 423 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 C4BPBP20851 252 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 VASPP50552 380 aaPredicted RBP11.11□□□□□ -0.63
USP1-201ENST00000339950 UBE2MP61081 183 aaKnown RBP11.11□□□□□ -0.63
USP1-201ENST00000339950 HSF2Q03933 536 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 PUDPQ08623 228 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 OR1Q1Q15612 314 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 LYPD8Q6UX82 237 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 UBE3DQ7Z6J8 389 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 SIRT6Q8N6T7 355 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 ZNF676Q8N7Q3 588 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 TSEN15Q8WW01 171 aaKnown RBP11.11□□□□□ -0.63
USP1-201ENST00000339950 ULBP3Q9BZM4 244 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 SEMA4CQ9C0C4 833 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 TCEAL2Q9H3H9 227 aaPredicted RBP11.11□□□□□ -0.63
USP1-201ENST00000339950 POLR1CO15160 346 aaPredicted RBP11.11□□□□□ -0.63
USP1-201ENST00000339950 ZNF10P21506 573 aaPredicted RBP11.11□□□□□ -0.63
USP1-201ENST00000339950 POU6F2P78424 691 aaPredicted RBP11.11□□□□□ -0.63
USP1-201ENST00000339950 MEDAGQ5VYS4 303 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 IKBIPQ70UQ0 350 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 CCDC190Q86UF4 302 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 NATD1Q8N6N6 113 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 OR6N2Q8NGY6 317 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 ADAD1Q96M93 576 aaKnown RBP11.11□□□□□ -0.63
USP1-201ENST00000339950 SLC6A18Q96N87 628 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 NMNAT3Q96T66 252 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 THAP7Q9BT49 309 aaPredicted RBP11.11□□□□□ -0.63
USP1-201ENST00000339950 SLC6A20Q9NP91 592 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 OR6C2Q9NZP2 312 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 FBXL3Q9UKT7 428 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 ICKQ9UPZ9 632 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 FKBP7Q9Y680 259 aa11.11□□□□□ -0.63
USP1-201ENST00000339950 B4DXG7 233 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 LINC01565O15544 149 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 CDC40O60508 579 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP1-201ENST00000339950 MRPS14O60783 128 aaKnown RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 CSTAP01040 98 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 MT-ND5P03915 603 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 ZNF3P17036 446 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 SNRPNP63162 240 aaKnown RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 RPS21P63220 83 aaKnown RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 C1orf189Q5VU69 101 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 KANSL1Q7Z3B3 1105 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 CSNK1A1LQ8N752 337 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 OR52R1Q8NGF1 315 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 ACOT11Q8WXI4 607 aaPredicted RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 GHSRQ92847 366 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 FGF14Q92915 247 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 TBC1D20Q96BZ9 403 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 CENPMQ9NSP4 180 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 SIDT1Q9NXL6 827 aaKnown RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 REV1Q9UBZ9 1251 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 ZNF69Q9UC07 566 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 PFDN2Q9UHV9 154 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 FLVCR2Q9UPI3 526 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 FXYD6-FXYD2A0A087WZ82 144 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 URADA6NGE7 173 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 TMEM229AB2RXF0 380 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 H0YGG7 62 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 MAN2B1O00754 1011 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 LGI1O95970 557 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 IFNGP01579 166 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 IGHA2P01877 340 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 ZNF806P0C7X5 589 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 DRD2P14416 443 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 MAKP20794 623 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 ARF3P61204 181 aaPredicted RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 IFITM2Q01629 132 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 CDC20Q12834 499 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 GAS6Q14393 721 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 SLC25A35Q3KQZ1 300 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 ZNF655Q8N720 491 aaPredicted RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 OR6F1Q8NGZ6 308 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 OR14A2Q96R54 314 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 LMF1Q96S06 567 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 PLA2G2FQ9BZM2 168 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 FXYD6Q9H0Q3 95 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 SLC38A1Q9H2H9 487 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 MLXQ9UH92 298 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 GPR34Q9UPC5 381 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 EXOSC1Q9Y3B2 195 aaKnown RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 A0A0G2JPF8 293 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 CDHR4A6H8M9 788 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 HNRNPCL3B7ZW38 293 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 FABP7O15540 132 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 HNRNPCL4P0DMR1 293 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 MYF5P13349 255 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 ERP29P30040 261 aaKnown RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 TSPAN5P62079 268 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 SNTB2Q13425 540 aaKnown RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 ENPP2Q13822 863 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 EFR3AQ14156 821 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 PON3Q15166 354 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 PRAMEF17Q5VTA0 474 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 HLA-DQA1Q5Y7H0 255 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 ATCAYQ86WG3 371 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 GPR135Q8IZ08 494 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms