RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 DNAJA4Q8WW22 397 aaPredicted RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 TMEM239Q8WW34 195 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 KIAA1143Q96AT1 154 aaPredicted RBP11.76□□□□□ -0.53
LIG1-201ENST00000263274 MSANTD3Q96H12 275 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 PTCHD1Q96NR3 888 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 SRMSQ9H3Y6 488 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 MYO15AQ9UKN7 3530 aa11.76□□□□□ -0.53
LIG1-201ENST00000263274 FAM171A2A8MVW0 826 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 TBX19O60806 448 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 ZIC2O95409 532 aaPredicted RBP11.75□□□□□ -0.53
LIG1-201ENST00000263274 C1QBP02746 253 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 THY1P04216 161 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 SLC35G6P0C7Q6 338 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 TRA2BP62995 288 aaKnown RBP11.75□□□□□ -0.53
LIG1-201ENST00000263274 SNRPNP63162 240 aaKnown RBP11.75□□□□□ -0.53
LIG1-201ENST00000263274 CRMP1Q14194 572 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 GXYLT1Q4G148 440 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 SFXN4Q6P4A7 337 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 ENPP7Q6UWV6 458 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 ADAMTSL4Q6UY14 1074 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 C17orf47Q8NEP4 570 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 COX14Q96I36 57 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 HS6ST2Q96MM7 605 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 TOX2Q96NM4 488 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 DPCDQ9BVM2 203 aaPredicted RBP11.75□□□□□ -0.53
LIG1-201ENST00000263274 EIF3KQ9UBQ5 218 aaKnown RBP11.75□□□□□ -0.53
LIG1-201ENST00000263274 KLHL21Q9UJP4 597 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.75□□□□□ -0.53
LIG1-201ENST00000263274 CACNG2Q9Y698 323 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 DENND4CQ5VZ89 1909 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 SLC43A1O75387 559 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 KAT7O95251 611 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 MT-ND4P03905 459 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 MYOGP15173 224 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 BMP8BP34820 402 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 PSMB10P40306 273 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 ACTR1BP42025 376 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 ACTR1AP61163 376 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 C19orf57Q0VDD7 668 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 OR1Q1Q15612 314 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 DECR1Q16698 335 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 THSD4Q6ZMP0 1018 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 FRRS1Q6ZNA5 592 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 BMP8AQ7Z5Y6 402 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 PLCZ1Q86YW0 608 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 IL17RCQ8NAC3 791 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 OR6K6Q8NGW6 343 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 SPPL3Q8TCT6 385 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 ABHD1Q96SE0 405 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 DPAGT1Q9H3H5 408 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 STARD5Q9NSY2 213 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 SEC16AO15027 2179 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 FZD7O75084 574 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 F8A1P23610 371 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 STOMP27105 288 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 GABRA3P34903 492 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 TOR2AQ5JU69 321 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 RNLSQ5VYX0 342 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 MFSD12Q6NUT3 480 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 LINGO2Q7L985 606 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 OAFQ86UD1 273 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 C10orf53Q8N6V4 93 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 ABHD4Q8TB40 342 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 SNX33Q8WV41 574 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 GHSRQ92847 366 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 TSACCQ96A04 125 aaPredicted RBP11.75□□□□□ -0.53
LIG1-201ENST00000263274 BPIFA2Q96DR5 249 aa11.75□□□□□ -0.53
LIG1-201ENST00000263274 MDC1Q14676 2089 aaKnown RBP11.74□□□□□ -0.53
LIG1-201ENST00000263274 TRAPPC13A5PLN9 417 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 CDHR4A6H8M9 788 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 SYT5O00445 386 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 GMFGO60234 142 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 TIMP1P01033 207 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 PVRP15151 417 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 M6PRP20645 277 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 DRD3P35462 400 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 ZNF81P51508 661 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 RPL6Q02878 288 aaKnown RBP11.74□□□□□ -0.53
LIG1-201ENST00000263274 TMEM44Q2T9K0 475 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 TMEM31Q5JXX7 168 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 EOGTQ5NDL2 527 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 TMEM64Q6YI46 380 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 GID4Q8IVV7 300 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 SAMD14Q8IZD0 417 aaPredicted RBP11.74□□□□□ -0.53
LIG1-201ENST00000263274 FAM181AQ8N9Y4 354 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 SDR9C7Q8NEX9 313 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 OR52E2Q8NGJ4 325 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 OR52N1Q8NH53 320 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 CCL4L1Q8NHW4 92 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 SFXN5Q8TD22 340 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 ARHGDIGQ99819 225 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 ZNF559Q9BR84 538 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 ORAI3Q9BRQ5 295 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 MENTQ9BUN1 341 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 C1QTNF2Q9BXJ5 285 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 CFHR5Q9BXR6 569 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 ZNF224Q9NZL3 707 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 MED31Q9Y3C7 131 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 STON1Q9Y6Q2 735 aa11.74□□□□□ -0.53
LIG1-201ENST00000263274 DGCR2P98153 550 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms