RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 FUNDC1Q8IVP5 155 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 ZZZ3Q8IYH5 903 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 CNEP1R1Q8N9A8 125 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 FAM71CQ8NEG0 241 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 TOR1AIP2Q8NFQ8 470 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 OR2V1Q8NHB1 315 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 AURKBQ96GD4 344 aaPredicted RBP20.6■□□□□ 0.89
LSM4-201ENST00000252816 TRNT1Q96Q11 434 aaKnown RBP20.6■□□□□ 0.89
LSM4-201ENST00000252816 THUMPD3Q9BV44 507 aaKnown RBP20.6■□□□□ 0.89
LSM4-201ENST00000252816 SLC38A1Q9H2H9 487 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 PIGMQ9H3S5 423 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 RMND5AQ9H871 391 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 ZNF446Q9NWS9 450 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 PACSIN3Q9UKS6 424 aa20.6■□□□□ 0.89
LSM4-201ENST00000252816 CLDN24A6NM45 220 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 A8MXE2 369 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 CXCL13O43927 109 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 STX1BP61266 288 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 EEF1A1P68104 462 aaKnown RBP20.59■□□□□ 0.89
LSM4-201ENST00000252816 PLAURQ03405 335 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 CBFBQ13951 182 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 GUSBP1Q15486 140 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 MAPK11Q15759 364 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 SLC25A53Q5H9E4 307 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 EEF1A1P5Q5VTE0 462 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 BTLAQ7Z6A9 289 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 OIT3Q8WWZ8 545 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 GTF2H4Q92759 462 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 MRGPRX4Q96LA9 322 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 KLHL15Q96M94 604 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 RBM24Q9BX46 236 aaKnown RBP20.59■□□□□ 0.89
LSM4-201ENST00000252816 TPT1P8Q9HAU6 139 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 GALNT8Q9NY28 637 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 LIPT1Q9Y234 373 aa20.59■□□□□ 0.89
LSM4-201ENST00000252816 ETV2O00321 342 aaPredicted RBP20.58■□□□□ 0.89
LSM4-201ENST00000252816 ANP32DO95626 131 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 PEX19P40855 299 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 CPA2P48052 419 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 ANXA11P50995 505 aaKnown RBP20.58■□□□□ 0.89
LSM4-201ENST00000252816 SIRPAP78324 504 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 HPCAP84074 193 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 C6orf10Q5SRN2 563 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 HBMQ6B0K9 141 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 PPP4R4Q6NUP7 873 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 SLC2A7Q6PXP3 512 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 LRRC74BQ6ZQY2 392 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 THOC1Q96FV9 657 aaKnown RBP20.58■□□□□ 0.89
LSM4-201ENST00000252816 PAIP1Q9H074 479 aaKnown RBP20.58■□□□□ 0.89
LSM4-201ENST00000252816 SLC35A3Q9Y2D2 325 aa20.58■□□□□ 0.89
LSM4-201ENST00000252816 NR2F1P10589 423 aa20.57■□□□□ 0.88
LSM4-201ENST00000252816 FCGR2AP12318 317 aa20.57■□□□□ 0.88
LSM4-201ENST00000252816 ETFAP13804 333 aa20.57■□□□□ 0.88
LSM4-201ENST00000252816 CD1EP15812 388 aa20.57■□□□□ 0.88
LSM4-201ENST00000252816 OTOGQ6ZRI0 2925 aa20.57■□□□□ 0.88
LSM4-201ENST00000252816 KIF18BQ86Y91 864 aa20.57■□□□□ 0.88
LSM4-201ENST00000252816 ATP6V1C2Q8NEY4 427 aa20.57■□□□□ 0.88
LSM4-201ENST00000252816 OSTF1Q92882 214 aa20.57■□□□□ 0.88
LSM4-201ENST00000252816 PAQR5Q9NXK6 330 aaPredicted RBP20.57■□□□□ 0.88
LSM4-201ENST00000252816 PCDHB14Q9Y5E9 798 aa20.57■□□□□ 0.88
LSM4-201ENST00000252816 AGAP5A6NIR3 686 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 MSTNO14793 375 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 SMNDC1O75940 238 aaKnown RBP eCLIP20.56■□□□□ 0.88
LSM4-201ENST00000252816 CGAP01215 116 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 HOXB9P17482 250 aaPredicted RBP20.56■□□□□ 0.88
LSM4-201ENST00000252816 MAGEA8P43361 318 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 SESN3P58005 492 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 KCNJ10P78508 379 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 SORDQ00796 357 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 TMEM176BQ3YBM2 270 aaPredicted RBP20.56■□□□□ 0.88
LSM4-201ENST00000252816 BLOC1S3Q6QNY0 202 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 LINC01560Q8TB33 94 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 FAM222BQ8WU58 562 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 SRXN1Q9BYN0 137 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 PRRG4Q9BZD6 226 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 OPN3Q9H1Y3 402 aaPredicted RBP20.56■□□□□ 0.88
LSM4-201ENST00000252816 SLC52A3Q9NQ40 469 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20.56■□□□□ 0.88
LSM4-201ENST00000252816 CCDC167Q9P0B6 97 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 MCTS1Q9ULC4 181 aaKnown RBP20.56■□□□□ 0.88
LSM4-201ENST00000252816 CLEC4AQ9UMR7 237 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 SPG11Q96JI7 2443 aa20.56■□□□□ 0.88
LSM4-201ENST00000252816 MPDZO75970 2070 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 TUBAL3A6NHL2 446 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 EDF1O60869 148 aaKnown RBP20.55■□□□□ 0.88
LSM4-201ENST00000252816 ADAM11O75078 769 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 NID1P14543 1247 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 RPS4Y1P22090 263 aaKnown RBP20.55■□□□□ 0.88
LSM4-201ENST00000252816 CRATP43155 626 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 CARD18P57730 90 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 SELENBP1Q13228 472 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 PDSS1Q5T2R2 415 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 ZNF474Q6S9Z5 364 aaPredicted RBP20.55■□□□□ 0.88
LSM4-201ENST00000252816 ST8SIA1Q92185 356 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 CNOT9Q92600 299 aaKnown RBP20.55■□□□□ 0.88
LSM4-201ENST00000252816 SPDL1Q96EA4 605 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 COQ10BQ9H8M1 238 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 MTHFD2LQ9H903 347 aaPredicted RBP20.55■□□□□ 0.88
LSM4-201ENST00000252816 DCTN4Q9UJW0 460 aa20.55■□□□□ 0.88
LSM4-201ENST00000252816 NR5A2O00482 541 aa20.54■□□□□ 0.88
LSM4-201ENST00000252816 SYNGR4O95473 234 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms