RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TXNDC15Q96J42 360 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 LCORQ96JN0 433 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-218ENST00000640036 OR5B12Q96R08 314 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 FGFBP2Q9BYJ0 223 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 NRSN2Q9GZP1 204 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 LACRTQ9GZZ8 138 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 MED28Q9H204 178 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 POPDC3Q9HBV1 291 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 FSCN3Q9NQT6 498 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 FER1L5A0AVI2 2057 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 HRO43593 1189 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 SULT1B1O43704 296 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 IFI30P13284 250 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 CRABP1P29762 137 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 TIA1P31483 386 aaKnown RBP eCLIP4.7□□□□□ -1.66
SCN1A-218ENST00000640036 THBS3P49746 956 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 TAS2R38P59533 333 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 GPX6P59796 221 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 CTXN1P60606 82 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF92Q03936 586 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 CBLBQ13191 982 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 CLN3Q13286 438 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 TRAM2Q15035 370 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 POU4F3Q15319 338 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 C5orf46Q6UWT4 87 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 LRRC57Q8N9N7 239 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 SLC25A43Q8WUT9 341 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-218ENST00000640036 CREB3L1Q96BA8 519 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 SGTBQ96EQ0 304 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 SEC16BQ96JE7 1060 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 LRRC61Q9BV99 259 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 KATNB1Q9BVA0 655 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 NUDT9Q9BW91 350 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 MTHFD2LQ9H903 347 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-218ENST00000640036 FER1L6Q2WGJ9 1857 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 ABLIM1O14639 778 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 TOX3O15405 576 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-218ENST00000640036 NRP2O60462 931 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 SLITRK5O94991 958 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 IGHG1P01857 330 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 C9P02748 559 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 BMI1P35226 326 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF81P51508 661 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 SEC24CP53992 1094 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 ERVK-16P61578 105 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 HFEQ30201 348 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF767PQ75MW2 155 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 OSTF1Q92882 214 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 MARK4Q96L34 752 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 NKX3-1Q99801 234 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-218ENST00000640036 B3GNT4Q9C0J1 378 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 CHODLQ9H9P2 273 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 KLHL42Q9P2K6 505 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 FBXL3Q9UKT7 428 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 B3GNT3Q9Y2A9 372 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 CMAHPQ9Y471 501 aa4.7□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF814B7Z6K7 855 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 PRKCAP17252 672 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 PRPH2P23942 346 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 CD1CP29017 333 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 MAT1AQ00266 395 aaKnown RBP4.69□□□□□ -1.66
SCN1A-218ENST00000640036 MOGSQ13724 837 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 PYCR3Q53H96 274 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 CDHR3Q6ZTQ4 885 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 YRDCQ86U90 279 aaKnown RBP4.69□□□□□ -1.66
SCN1A-218ENST00000640036 OR5T2Q8NGG2 359 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 BBS10Q8TAM1 723 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF418Q8TF45 676 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-218ENST00000640036 DUSP19Q8WTR2 217 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 CAVIN3Q969G5 261 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF419Q96HQ0 510 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-218ENST00000640036 HRASLS5Q96KN8 279 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 C3orf30Q96M34 536 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 KIAA1456Q9P272 454 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 INTS6Q9UL03 887 aaKnown RBP4.69□□□□□ -1.66
SCN1A-218ENST00000640036 SLC7A7Q9UM01 511 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 KDM3BQ7LBC6 1761 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 AHCYL1O43865 530 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 H1F0P07305 194 aaKnown RBP4.69□□□□□ -1.66
SCN1A-218ENST00000640036 ABHD2P08910 425 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 SELEP16581 610 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 OPRD1P41143 372 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 ZFP36L2P47974 494 aaKnown RBP4.69□□□□□ -1.66
SCN1A-218ENST00000640036 DCDC1P59894 354 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 NHLH1Q02575 133 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF718Q3SXZ3 478 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 KIAA1614Q5VZ46 1190 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 REEP3Q6NUK4 255 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 NIPAL3Q6P499 406 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 MKXQ8IYA7 352 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 NAGSQ8N159 534 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 JAGN1Q8N5M9 183 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 M1APQ8TC57 530 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 C16orf78Q8WTQ4 265 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 RCN3Q96D15 328 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 KCNK17Q96T54 332 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 HINT2Q9BX68 163 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 BTBD2Q9BX70 525 aa4.69□□□□□ -1.66
SCN1A-218ENST00000640036 MS4A7Q9GZW8 240 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-218ENST00000640036 USP22Q9UPT9 525 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms