RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 MYCBPQ99417 103 aaPredicted RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 ACAT2Q9BWD1 397 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 TEX13AQ9BXU3 409 aaPredicted RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 MAGT1Q9H0U3 335 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 GPN2Q9H9Y4 310 aaPredicted RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 MID1IP1Q9NPA3 183 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 HOMER3Q9NSC5 361 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 HMG20BQ9P0W2 317 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 MOSPD1Q9UJG1 213 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 ODF2LQ9ULJ1 636 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 PLA2G4CQ9UP65 541 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 TDRKHQ9Y2W6 561 aaKnown RBP2.04□□□□□ -2.08
CD44-239ENST00000639002 WIF1Q9Y5W5 379 aa2.04□□□□□ -2.08
CD44-239ENST00000639002 CPLX1O14810 134 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 ADAM12O43184 909 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 ZBTB14O43829 449 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 MED6O75586 246 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 THRBP10828 461 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 KIF5BP33176 963 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 RPS9P46781 194 aaKnown RBP2.03□□□□□ -2.08
CD44-239ENST00000639002 ACTN3Q08043 901 aaPredicted RBP2.03□□□□□ -2.08
CD44-239ENST00000639002 CASC10Q5T4H9 136 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 ARL6IP6Q8N6S5 226 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 OR51G1Q8NGK1 321 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 MGARPQ8TDB4 240 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 TMEM158Q8WZ71 300 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 CABS1Q96KC9 395 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 FOPNLQ96NB1 174 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 OR2M2Q96R28 347 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 TBC1D10AQ9BXI6 508 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 INPP5EQ9NRR6 644 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 C6orf203Q9P0P8 240 aaPredicted RBP2.03□□□□□ -2.08
CD44-239ENST00000639002 TMCC3Q9ULS5 477 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 TEX264Q9Y6I9 313 aa2.03□□□□□ -2.08
CD44-239ENST00000639002 RP1L1Q8IWN7 2480 aaPredicted RBP2.03□□□□□ -2.08
CD44-239ENST00000639002 PCM1Q15154 2024 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 TRBV2A0A0J9YWF9 115 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 GFYI3L273 518 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 KINO60870 393 aaKnown RBP2.02□□□□□ -2.09
CD44-239ENST00000639002 ZNF780AO75290 641 aaPredicted RBP2.02□□□□□ -2.09
CD44-239ENST00000639002 KLF8O95600 359 aaPredicted RBP2.02□□□□□ -2.09
CD44-239ENST00000639002 CSF2P04141 144 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 CCDC192P0DO97 292 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 ADRB3P13945 408 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 GCFC2P16383 781 aaKnown RBP2.02□□□□□ -2.09
CD44-239ENST00000639002 DESP17661 470 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 PRDX3P30048 256 aaKnown RBP2.02□□□□□ -2.09
CD44-239ENST00000639002 OTX2P32243 289 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 NUMBP49757 651 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 PPP2R5CQ13362 524 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 CCDC40Q4G0X9 1142 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 ATF7IP2Q5U623 682 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 MIER3Q7Z3K6 550 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 RNF182Q8N6D2 247 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 TEX9Q8N6V9 391 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 TMEM185AQ8NFB2 350 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 OR8H1Q8NGG4 311 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 MCHR1Q99705 422 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 COMMD4Q9H0A8 199 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 PPDPFQ9H3Y8 114 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 THAP9Q9H5L6 903 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 UTP6Q9NYH9 597 aaKnown RBP2.02□□□□□ -2.09
CD44-239ENST00000639002 ZNF835Q9Y2P0 537 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 STRAPQ9Y3F4 350 aaKnown RBP2.02□□□□□ -2.09
CD44-239ENST00000639002 KNSTRNQ9Y448 316 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 UGT2A1Q9Y4X1 527 aa2.02□□□□□ -2.09
CD44-239ENST00000639002 FBN1P35555 2871 aaKnown RBP2.01□□□□□ -2.09
CD44-239ENST00000639002 GPRASP1Q5JY77 1395 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 BRWD3Q6RI45 1802 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 E9PMD0 336 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 SGK494L7N484 410 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 MPHOSPH10O00566 681 aaKnown RBP2.01□□□□□ -2.09
CD44-239ENST00000639002 AIREO43918 545 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 SNAPINO95295 136 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 SLC25A27O95847 323 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 SLC4A1P02730 911 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 TPM2P07951 284 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 ZNF286BP0CG31 522 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 BCKDHAP12694 445 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 TSPAN8P19075 237 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 PTPN6P29350 595 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 LONP1P36776 959 aaKnown RBP2.01□□□□□ -2.09
CD44-239ENST00000639002 PRPS1P60891 318 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 CSNK1G2P78368 415 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 AP1B1Q10567 949 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 KPRPQ5T749 579 aaPredicted RBP2.01□□□□□ -2.09
CD44-239ENST00000639002 OR52W1Q6IF63 320 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 FAM71E1Q6IPT2 247 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 ZSCAN25Q6NSZ9 544 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 FAM159AQ6UWV7 190 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 COX15Q7KZN9 410 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 GCNT2Q8N0V5 402 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 BATF2Q8N1L9 274 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 CCNYQ8ND76 341 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 DUSP18Q8NEJ0 188 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 SLC22A8Q8TCC7 542 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 FAM151AQ8WW52 585 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 CHCHD10Q8WYQ3 142 aaPredicted RBP2.01□□□□□ -2.09
CD44-239ENST00000639002 SPATA13Q96N96 652 aa2.01□□□□□ -2.09
CD44-239ENST00000639002 RUFY1Q96T51 708 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms