RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SFXN5Q8TD22 340 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 RNF128Q8TEB7 428 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 IGFBPL1Q8WX77 278 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 OSTF1Q92882 214 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 CDS1Q92903 461 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 NPAS1Q99742 590 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 TMEM204Q9BSN7 226 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 TMEM109Q9BVC6 243 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 FBXO34Q9NWN3 711 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 CLEC4AQ9UMR7 237 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 USF3Q68DE3 2245 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 JMJD1CQ15652 2540 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 CHRNGP07510 517 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 ALDH3A1P30838 453 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 PTH2RP49190 550 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 CCT3P49368 545 aaKnown RBP16.45■□□□□ 0.22
CLN3-241ENST00000635861 ZNF117Q03924 483 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 CD226Q15762 336 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 ZNF239Q16600 458 aaKnown RBP16.45■□□□□ 0.22
CLN3-241ENST00000635861 KLHL26Q53HC5 615 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 TMEM201Q5SNT2 666 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 CCNJQ5T5M9 372 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 BHLHB9Q6PI77 547 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 ZNF611Q8N823 705 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 OR2W6PQ8NHA6 318 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 PHOSPHO1Q8TCT1 267 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 ADAMTS15Q8TE58 950 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 TMEM171Q8WVE6 324 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 PERPQ96FX8 193 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 ZIM3Q96PE6 472 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 ACTR6Q9GZN1 396 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 CXorf56Q9H5V9 222 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 ICAM5Q9UMF0 924 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 FAF1Q9UNN5 650 aaPredicted RBP16.45■□□□□ 0.22
CLN3-241ENST00000635861 SNX8Q9Y5X2 465 aa16.45■□□□□ 0.22
CLN3-241ENST00000635861 CSPG4Q6UVK1 2322 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 ERICH4A6NGS2 130 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 PRPS1L1P21108 318 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 ATP12AP54707 1039 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 FOXF1Q12946 379 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 DCST2Q5T1A1 773 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 SLC43A2Q8N370 569 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 OR7A2PQ8NGA2 310 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 COQ8BQ96D53 544 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 CHMP6Q96FZ7 201 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 MRGPRX4Q96LA9 322 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 TMEM185BQ9H7F4 350 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 KLHL13Q9P2N7 655 aa16.44■□□□□ 0.22
CLN3-241ENST00000635861 TMEM233B4DJY2 109 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 H7C1Q1 480 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 HS3ST1O14792 307 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 NUDT14O95848 222 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 LY6G6DO95868 133 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 LAMP1P11279 417 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 ZNF844Q08AG5 666 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 MAD2L1Q13257 205 aaPredicted RBP16.43■□□□□ 0.22
CLN3-241ENST00000635861 C6orf136Q5SQH8 315 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 ADAM5Q6NVV9 412 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 TOR1AIP2Q8NFQ8 470 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 ARL8AQ96BM9 186 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 PLPPR2Q96GM1 343 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 ROPN1BQ9BZX4 212 aaPredicted RBP16.43■□□□□ 0.22
CLN3-241ENST00000635861 BHLHE41Q9C0J9 482 aaPredicted RBP16.43■□□□□ 0.22
CLN3-241ENST00000635861 ROPN1Q9HAT0 212 aaPredicted RBP16.43■□□□□ 0.22
CLN3-241ENST00000635861 NGBQ9NPG2 151 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 ZNF701Q9NV72 531 aaPredicted RBP16.43■□□□□ 0.22
CLN3-241ENST00000635861 GPATCH2Q9NW75 528 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 LGALS13Q9UHV8 139 aa16.43■□□□□ 0.22
CLN3-241ENST00000635861 NPIPB9F8W1W9 429 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 ZNF195O14628 629 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 EIF4E2O60573 245 aaKnown RBP16.42■□□□□ 0.22
CLN3-241ENST00000635861 PEX11AO75192 247 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 PRKD3O94806 890 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 AK1P00568 194 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 OPN1LWP04000 364 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 EFNA1P20827 205 aaPredicted RBP16.42■□□□□ 0.22
CLN3-241ENST00000635861 SFTPDP35247 375 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 C21orf58P58505 322 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 SELENBP1Q13228 472 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 TP53BP2Q13625 1128 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 PTGR1Q14914 329 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 SLC25A53Q5H9E4 307 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 GABRG1Q8N1C3 465 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 FBXO27Q8NI29 283 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 ZFP90Q8TF47 636 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 OTUB1Q96FW1 271 aaPredicted RBP16.42■□□□□ 0.22
CLN3-241ENST00000635861 C12orf49Q9H741 205 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 CXorf36Q9H7Y0 433 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 DTNAQ9Y4J8 743 aa16.42■□□□□ 0.22
CLN3-241ENST00000635861 CADP27708 2225 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 DNHD1Q96M86 4753 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 TLDC2A0PJX2 215 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 DUXAA6NLW8 204 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 GTPBP1O00178 669 aaKnown RBP16.41■□□□□ 0.22
CLN3-241ENST00000635861 ETV2O00321 342 aaPredicted RBP16.41■□□□□ 0.22
CLN3-241ENST00000635861 GCM2O75603 506 aaPredicted RBP16.41■□□□□ 0.22
CLN3-241ENST00000635861 PRKCAP17252 672 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 IFFO1Q0D2I5 559 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 P2RY6Q15077 328 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 SMU1Q2TAY7 513 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms