RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 OR5W2Q8NH69 310 aa11.83□□□□□ -0.52
LINC00540-203ENST00000631321 ELSPBP1Q96BH3 223 aa11.83□□□□□ -0.52
LINC00540-203ENST00000631321 BPIFA2Q96DR5 249 aa11.83□□□□□ -0.52
LINC00540-203ENST00000631321 TEAD3Q99594 435 aa11.83□□□□□ -0.52
LINC00540-203ENST00000631321 NIPAL2Q9H841 368 aa11.83□□□□□ -0.52
LINC00540-203ENST00000631321 ADAP2Q9NPF8 381 aa11.83□□□□□ -0.52
LINC00540-203ENST00000631321 PLSCR3Q9NRY6 295 aa11.83□□□□□ -0.52
LINC00540-203ENST00000631321 C14orf105Q9NVL8 296 aa11.83□□□□□ -0.52
LINC00540-203ENST00000631321 FBXO34Q9NWN3 711 aa11.83□□□□□ -0.52
LINC00540-203ENST00000631321 SLC35A3Q9Y2D2 325 aa11.83□□□□□ -0.52
LINC00540-203ENST00000631321 GOLGA4Q13439 2230 aaKnown RBP11.83□□□□□ -0.52
LINC00540-203ENST00000631321 FAM25AB3EWG3 89 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 FAM25CB3EWG5 89 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 FAM25GB3EWG6 89 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 PRR23D1E9PI22 279 aaPredicted RBP11.82□□□□□ -0.52
LINC00540-203ENST00000631321 PRR23D2P0DMB1 279 aaPredicted RBP11.82□□□□□ -0.52
LINC00540-203ENST00000631321 LAMP2P13473 410 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 CAPZA2P47755 286 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 RFX3P48380 749 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 Q5BKY6 102 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 PXKQ7Z7A4 578 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 GLCCI1Q86VQ1 547 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 TPRA1Q86W33 373 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 CDK20Q8IZL9 346 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 YIPF7Q8N8F6 280 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 COX18Q8N8Q8 333 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 OR13C2Q8NGS9 318 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 SLC2A12Q8TD20 617 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 HOXB13Q92826 284 aaPredicted RBP11.82□□□□□ -0.52
LINC00540-203ENST00000631321 WDR92Q96MX6 357 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 MYADMQ96S97 322 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 NDC1Q9BTX1 674 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 PPIL3Q9H2H8 161 aaKnown RBP11.82□□□□□ -0.52
LINC00540-203ENST00000631321 MTIF3Q9H2K0 278 aaKnown RBP11.82□□□□□ -0.52
LINC00540-203ENST00000631321 HAO2Q9NYQ3 351 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 ACTR10Q9NZ32 417 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 NLKQ9UBE8 527 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 EXTL2Q9UBQ6 330 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 BAIAP2Q9UQB8 552 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 MED31Q9Y3C7 131 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 LOC105369274A0A096LPK9 316 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 LOC102723532A0A0G2JNH3 316 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 A0A1W2PQF6 199 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 ANKRD34BA5PLL1 514 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 A6NL46 340 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 CYR61O00622 381 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 ORC5O43913 435 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 FGF17O60258 216 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 BRINP1O60477 761 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 SC5DO75845 299 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 APBB3O95704 486 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 GPR75O95800 540 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 IL9P15248 144 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 ID2Q02363 134 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 PRICKLE4Q2TBC4 344 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 IDNKQ5T6J7 187 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 OR4N4Q8N0Y3 316 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 SLC43A2Q8N370 569 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 OR10H4Q8NGA5 316 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 CCL4L1Q8NHW4 92 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 ZFAND1Q8TCF1 268 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 CREB3L1Q96BA8 519 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 NACC2Q96BF6 587 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 ZNF559Q9BR84 538 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.82□□□□□ -0.52
LINC00540-203ENST00000631321 ACOXLQ9NUZ1 547 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 MAT2BQ9NZL9 334 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 ZMIZ1Q9ULJ6 1067 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 CLCA3PQ9Y6N3 262 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 MAU2Q9Y6X3 613 aa11.82□□□□□ -0.52
LINC00540-203ENST00000631321 A0A0G2JK05 382 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 LRRC72A6NJI9 287 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 TTC36A6NLP5 189 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 E9PI62 339 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 SBK2P0C263 348 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 NPR2P20594 1047 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 DRD5P21918 477 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 SHC1P29353 583 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 RBMS1P29558 406 aaKnown RBP11.81□□□□□ -0.52
LINC00540-203ENST00000631321 BMP8BP34820 402 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 ACTR1BP42025 376 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 GZMKP49863 264 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 ACTR1AP61163 376 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 EFR3AQ14156 821 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 C6orf183Q5T699 404 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 PARM1Q6UWI2 310 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 PAMR1Q6UXH9 720 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 BMP8AQ7Z5Y6 402 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 OAFQ86UD1 273 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 TEX19Q8NA77 164 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 TMEM52Q8NDY8 209 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 TRIM63Q969Q1 353 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 CTHRC1Q96CG8 243 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 ART5Q96L15 291 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 TBX5Q99593 518 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 ZFYVE21Q9BQ24 234 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 IFT27Q9BW83 186 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 BEX2Q9BXY8 128 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 ADGRL4Q9HBW9 690 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 MEPEQ9NQ76 525 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms