RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LRRC8CQ8TDW0 803 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 AKAP1Q92667 903 aaKnown RBP eCLIP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 SCRN2Q96FV2 425 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 BBS4Q96RK4 519 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 MCCC1Q96RQ3 725 aaPredicted RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 NUDCD1Q96RS6 583 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 NAP1L3Q99457 506 aaPredicted RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 NPY6RQ99463 290 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 NRTNQ99748 197 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 WDR83Q9BRX9 315 aaKnown RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 C1QTNF5Q9BXJ0 243 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 PANK2Q9BZ23 570 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 OSBPL8Q9BZF1 889 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 SRMSQ9H3Y6 488 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 KIR3DX1Q9H7L2 352 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 COQ10BQ9H8M1 238 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 PDFQ9HBH1 243 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 CUTCQ9NTM9 273 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 ASNSD1Q9NWL6 643 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 KLHL28Q9NXS3 571 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF226Q9NYT6 803 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 GRHL1Q9NZI5 618 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 AIPL1Q9NZN9 384 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 CTNNAL1Q9UBT7 734 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF282Q9UDV7 671 aaPredicted RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 OR12D3Q9UGF7 316 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 PLCL2Q9UPR0 1127 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 CARD8Q9Y2G2 431 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 TMED5Q9Y3A6 229 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 WIF1Q9Y5W5 379 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 UBR4Q5T4S7 5183 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 A0A1W2PQ67 120 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 RPS10-NUDT3A0A1W2PQS6 291 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 ELOVL7A1L3X0 281 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 ERICH4A6NGS2 130 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 CBY3A6NI87 242 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 KRTAP9-6A8MVA2 160 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 FAM72CH0Y354 149 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 OR10H2O60403 315 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 CRCPO75575 148 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 RSL1D1O76021 490 aaKnown RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 AKR7A3O95154 331 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 PLGP00747 810 aaPredicted RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TGFAP01135 160 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 C8orf89P0DMQ9 161 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 PCNAP12004 261 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 VPREB1P12018 145 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 NCF1P14598 390 aaPredicted RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 GABRA1P14867 456 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 AREGP15514 252 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 GNAZP19086 355 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 CRYGSP22914 178 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 LOXP28300 417 aaPredicted RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 CEACAM8P31997 349 aaPredicted RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 CYLC1P35663 651 aaPredicted RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 CYB561P49447 251 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 MXI1P50539 228 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 CCR8P51685 355 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 STC1P52823 247 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 UCP2P55851 309 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TAS2R40P59535 323 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 AP1S1P61966 158 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 PLGLB1Q02325 96 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 LGALS3BPQ08380 585 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TRAF2Q12933 501 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 SCGB2A2Q13296 93 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 KRT33BQ14525 404 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 SIX1Q15475 284 aaPredicted RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 VWC2Q2TAL6 325 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 CDONQ4KMG0 1287 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 LRRC23Q53EV4 343 aaPredicted RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 GLE1Q53GS7 698 aaKnown RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 PIK3CD-AS1Q5SR53 167 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 ARMC12Q5T9G4 340 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 RNASEH2BQ5TBB1 312 aaKnown RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 FAM72AQ5TYM5 149 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TMEM268Q5VZI3 342 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 FAM72DQ6L9T8 149 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 CASC4Q6P4E1 433 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 WDR59Q6PJI9 974 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF704Q6ZNC4 412 aaPredicted RBP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TRILQ7L0X0 811 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 DET1Q7L5Y6 550 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TBC1D26Q86UD7 250 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 FAM72BQ86X60 149 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TRAPPC5Q8IUR0 188 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 BATF2Q8N1L9 274 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 SLC5A8Q8N695 610 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF611Q8N823 705 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 FAM184AQ8NB25 1140 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 OR56B2PQ8NGI1 322 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 LMO3Q8TAP4 145 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 MRAPQ8TCY5 172 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TRPC4APQ8TEL6 797 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 LCN9Q8WX39 176 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 RXFP2Q8WXD0 754 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 THRSPQ92748 146 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.84□□□□□ -1.79
LINC00540-201ENST00000611481 SPSB1Q96BD6 273 aa3.84□□□□□ -1.79
LINC00540-201ENST00000611481 SAMD8Q96LT4 415 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms