RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LCKP06239 509 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 ADORA3P0DMS8 318 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 IFI30P13284 250 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 CSTF2P33240 577 aaKnown RBP eCLIP13.07□□□□□ -0.32
LIG3-205ENST00000585941 GPR143P51810 404 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 COPZ1P61923 177 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 ZNF91Q05481 1191 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 NNATQ16517 81 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 CTF1Q16619 201 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 TIGD6Q17RP2 521 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 ALG10BQ5I7T1 473 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 COX15Q7KZN9 410 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 SLC29A4Q7RTT9 530 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 TMEM105Q8N8V8 129 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 ZSCAN1Q8NBB4 408 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 C17orf47Q8NEP4 570 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 OR1N1Q8NGS0 311 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 OR4C3Q8NH37 302 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 FGF11Q92914 225 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 ADIPOR1Q96A54 375 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 BPIFA2Q96DR5 249 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 CLIP3Q96DZ5 547 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 LRR1Q96L50 414 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 GFM1Q96RP9 751 aaKnown RBP13.07□□□□□ -0.32
LIG3-205ENST00000585941 DCUN1D5Q9BTE7 237 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 ZNF426Q9BUY5 554 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 NXF5Q9H1B4 397 aaKnown RBP13.07□□□□□ -0.32
LIG3-205ENST00000585941 EXOSC3Q9NQT5 275 aaKnown RBP13.07□□□□□ -0.32
LIG3-205ENST00000585941 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.07□□□□□ -0.32
LIG3-205ENST00000585941 ASCC3Q8N3C0 2202 aaKnown RBP13.07□□□□□ -0.32
LIG3-205ENST00000585941 LAMA1P25391 3075 aa13.07□□□□□ -0.32
LIG3-205ENST00000585941 SCDO00767 359 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 PRODHO43272 600 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 BCAS1O75363 584 aaPredicted RBP13.06□□□□□ -0.32
LIG3-205ENST00000585941 SCRG1O75711 98 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 SLC34A2O95436 690 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 CYC1P08574 325 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 CD36P16671 472 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 BMP7P18075 431 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 PGGHGQ32M88 737 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 NKAIN1Q4KMZ8 207 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 WDR88Q6ZMY6 472 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 PPP1R3BQ86XI6 285 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 FAM71CQ8NEG0 241 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 STT3BQ8TCJ2 826 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 HSPBAP1Q96EW2 488 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 ZNF582Q96NG8 517 aaPredicted RBP13.06□□□□□ -0.32
LIG3-205ENST00000585941 NUDT9Q9BW91 350 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 SYNDIG1Q9H7V2 258 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 FLRT3Q9NZU0 649 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 ERGIC3Q9Y282 383 aa13.06□□□□□ -0.32
LIG3-205ENST00000585941 KDM4EB2RXH2 506 aaPredicted RBP13.05□□□□□ -0.32
LIG3-205ENST00000585941 M0R3G1 203 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 SURF4O15260 269 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 MAN1A2O60476 641 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 HCN1O60741 890 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 ZGLP1P0C6A0 271 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 TBXA2RP21731 343 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 GRK5P34947 590 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 DCDP81605 110 aaKnown RBP13.05□□□□□ -0.32
LIG3-205ENST00000585941 RAB40BQ12829 278 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 IL11RAQ14626 422 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 EBPQ15125 230 aaKnown RBP13.05□□□□□ -0.32
LIG3-205ENST00000585941 LINC00114Q6XXX2 140 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 MEX3DQ86XN8 651 aaKnown RBP13.05□□□□□ -0.32
LIG3-205ENST00000585941 ZNF321PQ8N8H1 164 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 FANK1Q8TC84 345 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 GRHL3Q8TE85 626 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 EFHD2Q96C19 240 aaPredicted RBP13.05□□□□□ -0.32
LIG3-205ENST00000585941 MND1Q9BWT6 205 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 DPH1Q9BZG8 443 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 CTSFQ9UBX1 484 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 DIMT1Q9UNQ2 313 aaKnown RBP13.05□□□□□ -0.32
LIG3-205ENST00000585941 BAIAP2Q9UQB8 552 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 EFCAB9A8MZ26 197 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 PATE3B3GLJ2 98 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 CDC42EP2O14613 210 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 PPM1BO75688 479 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 UTS2O95399 124 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 NTN1O95631 604 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 RAB36O95755 333 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 PTHP01270 115 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 NGFRP08138 427 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 ZNF883P0CG24 379 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 ATXN8OSP0DMR3 200 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 UBL4AP11441 157 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 MAKP20794 623 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 IL12BP29460 328 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 TGFBR2P37173 567 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 RNF144AP50876 292 aaPredicted RBP13.05□□□□□ -0.32
LIG3-205ENST00000585941 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIG3-205ENST00000585941 CLEC12AQ5QGZ9 265 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 FNDC7Q5VTL7 733 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 PWWP2BQ6NUJ5 590 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 SMARCD3Q6STE5 483 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 OVCH1Q7RTY7 1134 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 LAPTM4BQ86VI4 370 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 ZBTB44Q8NCP5 570 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 ANKK1Q8NFD2 765 aa13.05□□□□□ -0.32
LIG3-205ENST00000585941 OR4Q3Q8NH05 313 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms