RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 CCDC63Q8NA47 563 aa9.43□□□□□ -0.9
RFFL-209ENST00000581265 CLHC1Q8NHS4 586 aa9.43□□□□□ -0.9
RFFL-209ENST00000581265 PSMA8Q8TAA3 256 aa9.43□□□□□ -0.9
RFFL-209ENST00000581265 RAB3IL1Q8TBN0 382 aa9.43□□□□□ -0.9
RFFL-209ENST00000581265 PHOSPHO1Q8TCT1 267 aa9.43□□□□□ -0.9
RFFL-209ENST00000581265 TACO1Q9BSH4 297 aaKnown RBP9.43□□□□□ -0.9
RFFL-209ENST00000581265 GATA5Q9BWX5 397 aaPredicted RBP9.43□□□□□ -0.9
RFFL-209ENST00000581265 ESRP2Q9H6T0 727 aaKnown RBP9.43□□□□□ -0.9
RFFL-209ENST00000581265 PPCSQ9HAB8 311 aa9.43□□□□□ -0.9
RFFL-209ENST00000581265 ZCCHC3Q9NUD5 404 aaKnown RBP9.43□□□□□ -0.9
RFFL-209ENST00000581265 ATP6V1HQ9UI12 483 aa9.43□□□□□ -0.9
RFFL-209ENST00000581265 RNF115Q9Y4L5 304 aa9.43□□□□□ -0.9
RFFL-209ENST00000581265 SNX8Q9Y5X2 465 aa9.43□□□□□ -0.9
RFFL-209ENST00000581265 GPC6Q9Y625 555 aaPredicted RBP9.43□□□□□ -0.9
RFFL-209ENST00000581265 NUP214P35658 2090 aaPredicted RBP9.43□□□□□ -0.9
RFFL-209ENST00000581265 TMEM114B3SHH9 223 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 H3BNH8 94 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 COPEO14579 308 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 WIPF1O43516 503 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 NTN1O95631 604 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 SHBGP04278 402 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 THBS1P07996 1170 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 KRT4P19013 534 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 ATP6V1C1P21283 382 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 IDUAP35475 653 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 RPL3P39023 403 aaKnown RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 CCT3P49368 545 aaKnown RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 P2RX1P51575 399 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 SUMO3P55854 103 aaPredicted RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 RPL38P63173 70 aaKnown RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 FOXF1Q12946 379 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 ITGADQ13349 1161 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 LASP1Q14847 261 aaKnown RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 TAB1Q15750 504 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 TMEM176BQ3YBM2 270 aaPredicted RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 GALNTL6Q49A17 601 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 HEPHL1Q6MZM0 1159 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 CDC73Q6P1J9 531 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 FCRLAQ7L513 359 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 NATD1Q8N6N6 113 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 EIF1ADQ8N9N8 165 aaKnown RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 ZNF527Q8NB42 609 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 FBXO27Q8NI29 283 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 PIWIL2Q8TC59 973 aaKnown RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 GPR119Q8TDV5 335 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 SMAP2Q8WU79 429 aaPredicted RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 JADE3Q92613 823 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 CDS1Q92903 461 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 FBXW5Q969U6 566 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 OTUB1Q96FW1 271 aaPredicted RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 TRMT61AQ96FX7 289 aaKnown RBP9.42□□□□□ -0.9
RFFL-209ENST00000581265 MRGPRX4Q96LA9 322 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 ACTRT3Q9BYD9 372 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 SRXN1Q9BYN0 137 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 BCO1Q9HAY6 547 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 MID2Q9UJV3 735 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 TRAF6Q9Y4K3 522 aa9.42□□□□□ -0.9
RFFL-209ENST00000581265 ALPK2Q86TB3 2170 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 ZNF814B7Z6K7 855 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 NPIPB9F8W1W9 429 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 KIF2AO00139 706 aaPredicted RBP9.41□□□□□ -0.9
RFFL-209ENST00000581265 ETV2O00321 342 aaPredicted RBP9.41□□□□□ -0.9
RFFL-209ENST00000581265 SCAMP2O15127 329 aaKnown RBP9.41□□□□□ -0.9
RFFL-209ENST00000581265 OIP5O43482 229 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 NUDT14O95848 222 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 ADAP00813 363 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 TP53P04637 393 aaPredicted RBP9.41□□□□□ -0.9
RFFL-209ENST00000581265 CD3EP07766 207 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 SOD3P08294 240 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 LAMP1P11279 417 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 PRKCAP17252 672 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 EFNA1P20827 205 aaPredicted RBP9.41□□□□□ -0.9
RFFL-209ENST00000581265 ENPP1P22413 925 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 IL32P24001 234 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 ATP12AP54707 1039 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 RAC3P60763 192 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 DMTNQ08495 405 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 PCLAFQ15004 111 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 TSC22D1Q15714 1073 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 TOMM34Q15785 309 aaPredicted RBP9.41□□□□□ -0.9
RFFL-209ENST00000581265 CLEC12BQ2HXU8 276 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 SLC25A53Q5H9E4 307 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.41□□□□□ -0.9
RFFL-209ENST00000581265 ALKBH2Q6NS38 261 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 SEZ6L2Q6UXD5 910 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 OR7A2PQ8NGA2 310 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 OR5W2Q8NH69 310 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 KIF18AQ8NI77 898 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 ADAMTS15Q8TE58 950 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 OR5P2Q8WZ92 322 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 KISS1RQ969F8 398 aaPredicted RBP9.41□□□□□ -0.9
RFFL-209ENST00000581265 COQ8BQ96D53 544 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 PPP3R2Q96LZ3 170 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 RHOXF2Q9BQY4 288 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 REG4Q9BYZ8 158 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 GRIP2Q9C0E4 1043 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 COQ10BQ9H8M1 238 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 GPATCH2Q9NW75 528 aa9.41□□□□□ -0.9
RFFL-209ENST00000581265 ING1Q9UK53 422 aaPredicted RBP9.41□□□□□ -0.9
RFFL-209ENST00000581265 FAF1Q9UNN5 650 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms