RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ZCCHC23Q6ZST2 131 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 BEND4Q6ZU67 534 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 PLEKHM3Q6ZWE6 761 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 NUFIP2Q7Z417 695 aaKnown RBP10.37□□□□□ -0.75
USP3-220ENST00000561381 R3HCC1LQ7Z5L2 792 aaKnown RBP10.37□□□□□ -0.75
USP3-220ENST00000561381 PRIMA1Q86XR5 153 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 MISPQ8IVT2 679 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 KRTCAP2Q8N6L1 136 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 BANPQ8N9N5 519 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 ATP6V1C2Q8NEY4 427 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 FBXO27Q8NI29 283 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 RAB3IL1Q8TBN0 382 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 HPS1Q92902 700 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 MTERF3Q96E29 417 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 APOPT1Q96IL0 206 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 STACQ99469 402 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 BDH2Q9BUT1 245 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 C1orf50Q9BV19 199 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 PIGUQ9H490 435 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 CXorf36Q9H7Y0 433 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 PPCSQ9HAB8 311 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 DUSP22Q9NRW4 184 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 GLRX2Q9NS18 164 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 MID2Q9UJV3 735 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 CARD8Q9Y2G2 431 aa10.37□□□□□ -0.75
USP3-220ENST00000561381 FAM171A2A8MVW0 826 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 ZNF195O14628 629 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 NPHS1O60500 1241 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 SPAG7O75391 227 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 SLU7O95391 586 aaKnown RBP10.36□□□□□ -0.75
USP3-220ENST00000561381 CNOT4O95628 575 aaKnown RBP10.36□□□□□ -0.75
USP3-220ENST00000561381 NUDT14O95848 222 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 C6orf47O95873 294 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 PSMB1P20618 241 aaKnown RBP10.36□□□□□ -0.75
USP3-220ENST00000561381 ATP6V1C1P21283 382 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 HPCAL1P37235 193 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 CCT3P49368 545 aaKnown RBP10.36□□□□□ -0.75
USP3-220ENST00000561381 TP53BP2Q13625 1128 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 TMEM176BQ3YBM2 270 aaPredicted RBP10.36□□□□□ -0.75
USP3-220ENST00000561381 KLHL26Q53HC5 615 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 XKR7Q5GH72 579 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 DCST2Q5T1A1 773 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 PDSS1Q5T2R2 415 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 TFAP2EQ6VUC0 442 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 ATG4DQ86TL0 474 aaPredicted RBP10.36□□□□□ -0.75
USP3-220ENST00000561381 STK32CQ86UX6 486 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 TUSC5Q8IXB3 177 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 EIF1ADQ8N9N8 165 aaKnown RBP10.36□□□□□ -0.75
USP3-220ENST00000561381 OR5AK3PQ8NH89 298 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 RNF128Q8TEB7 428 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 AKAP1Q92667 903 aaKnown RBP eCLIP10.36□□□□□ -0.75
USP3-220ENST00000561381 S100PBPQ96BU1 408 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 PPP3R2Q96LZ3 170 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 TMEM204Q9BSN7 226 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 ACTRT3Q9BYD9 372 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 COQ10BQ9H8M1 238 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 ANKZF1Q9H8Y5 726 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 HHATLQ9HCP6 504 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 GPATCH2Q9NW75 528 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 MKS1Q9NXB0 559 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 ICAM5Q9UMF0 924 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 GPR52Q9Y2T5 361 aa10.36□□□□□ -0.75
USP3-220ENST00000561381 JMJD1CQ15652 2540 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 IGHV3-15A0A0B4J1V0 119 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 KIAA1324LA8MWY0 1029 aaPredicted RBP10.35□□□□□ -0.75
USP3-220ENST00000561381 TMEM114B3SHH9 223 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 HS3ST1O14792 307 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 SKAP2O75563 359 aaPredicted RBP10.35□□□□□ -0.75
USP3-220ENST00000561381 GCM2O75603 506 aaPredicted RBP10.35□□□□□ -0.75
USP3-220ENST00000561381 ENPP1P22413 925 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 ELK4P28324 431 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 EIF1P41567 113 aaKnown RBP10.35□□□□□ -0.75
USP3-220ENST00000561381 P2RX1P51575 399 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 NR1H2P55055 460 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 RPS26P62854 115 aaKnown RBP10.35□□□□□ -0.75
USP3-220ENST00000561381 CAPRIN1Q14444 709 aaKnown RBP10.35□□□□□ -0.75
USP3-220ENST00000561381 SPDYE7PQ495Y7 208 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 TMEM201Q5SNT2 666 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 C6orf136Q5SQH8 315 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 LCE2CQ5TA81 110 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 IL23RQ5VWK5 629 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 GTF2IRD2BQ6EKJ0 949 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 OLIG3Q7RTU3 272 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 MTERF4Q7Z6M4 381 aaKnown RBP10.35□□□□□ -0.75
USP3-220ENST00000561381 GTF2IRD2Q86UP8 949 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 GABRG1Q8N1C3 465 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 ZNF619Q8N2I2 560 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 ZNF614Q8N883 585 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 OR5D16Q8NGK9 328 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 LILRB1Q8NHL6 650 aaPredicted RBP10.35□□□□□ -0.75
USP3-220ENST00000561381 RFWD2Q8NHY2 731 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 PSMA8Q8TAA3 256 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 GPR119Q8TDV5 335 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 ADAMTS15Q8TE58 950 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 TMEM171Q8WVE6 324 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 OR5P2Q8WZ92 322 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 COQ8BQ96D53 544 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 ZNF701Q9NV72 531 aaPredicted RBP10.35□□□□□ -0.75
USP3-220ENST00000561381 KLHL13Q9P2N7 655 aa10.35□□□□□ -0.75
USP3-220ENST00000561381 ZDHHC2Q9UIJ5 367 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms