RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 UBTFL6P0CB48 400 aaPredicted RBP8.41□□□□□ -1.06
LDLR-210ENST00000559340 GP1BBP13224 206 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 DPP4P27487 766 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 HTR3AP46098 478 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 CCR4P51679 360 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 EEF1A1P68104 462 aaKnown RBP8.41□□□□□ -1.06
LDLR-210ENST00000559340 FOXO1Q12778 655 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 NFATC3Q12968 1075 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 FNDC7Q5VTL7 733 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 PGM2L1Q6PCE3 622 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 ZNF836Q6ZNA1 936 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 FKBP9P1Q75LS8 142 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 CBLL1Q75N03 491 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 OLIG3Q7RTU3 272 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 RANBP3LQ86VV4 465 aaPredicted RBP8.41□□□□□ -1.06
LDLR-210ENST00000559340 ULK2Q8IYT8 1036 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 FADS6Q8N9I5 356 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 WDSUB1Q8N9V3 476 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 OR2M3Q8NG83 312 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 ZNF563Q8TA94 476 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 ST8SIA1Q92185 356 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 NR4A3Q92570 626 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 ZBTB8AQ96BR9 441 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 TAMM41Q96BW9 452 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 ASB9Q96DX5 294 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 SH3YL1Q96HL8 342 aaPredicted RBP8.41□□□□□ -1.06
LDLR-210ENST00000559340 TPD52L3Q96J77 140 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 GNRHR2Q96P88 292 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 ZNF559Q9BR84 538 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 UGT2B28Q9BY64 529 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 TRIM2Q9C040 744 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 QRSL1Q9H0R6 528 aaKnown RBP8.41□□□□□ -1.06
LDLR-210ENST00000559340 LDAHQ9H6V9 325 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 EXO5Q9H790 373 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 TMEM27Q9HBJ8 222 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 ACKR4Q9NPB9 350 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 DCAF13Q9NV06 445 aaKnown RBP8.41□□□□□ -1.06
LDLR-210ENST00000559340 OLAHQ9NV23 265 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 SELENONQ9NZV5 590 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 MED11Q9P086 117 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 RPS6KB2Q9UBS0 482 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 KCNE5Q9UJ90 142 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 PACSIN3Q9UKS6 424 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 USP22Q9UPT9 525 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 MED12Q93074 2177 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 A0A0G2JMM0 328 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 A0A1W2PPB8 328 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 A0A1W2PRS3 328 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 AQP12BA6NM10 295 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 KIR3DP1A8MWS1 328 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 B8ZZF3 427 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 ARPC2O15144 300 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 HCN1O60741 890 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 FMO6PO60774 539 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 GCM2O75603 506 aaPredicted RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 PDE5AO76074 875 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 SORBS2O94875 1100 aaKnown RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 ZNF682O95780 498 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 SERPINA1P01009 418 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 HPNP05981 417 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 FESP07332 822 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 UMPSP11172 480 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 NCK1P16333 377 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 ITGA2P17301 1181 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 HK1P19367 917 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 FKBP2P26885 142 aaKnown RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 ADH6P28332 368 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 RGS8P57771 180 aaPredicted RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 KCNC4Q03721 635 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 ZNF117Q03924 483 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 DMTNQ08495 405 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 EPS8Q12929 822 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 SKP2Q13309 424 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 CD226Q15762 336 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 IFI44LQ53G44 452 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 OR5M10Q6IEU7 315 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 LCN8Q6JVE9 175 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 AAGABQ6PD74 315 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 ASRGL1Q7L266 308 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 CYP4Z1Q86W10 505 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 AQP12AQ8IXF9 295 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 CLIP4Q8N3C7 705 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 CISD2Q8N5K1 135 aaKnown RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 TMEM251Q8N6I4 163 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 SMYD1Q8NB12 490 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 FAM156AQ8NDB6 213 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 FAM71CQ8NEG0 241 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 OR14L1PQ8NHC6 308 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 GPR119Q8TDV5 335 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 FAR1Q8WVX9 515 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 GEMIN6Q8WXD5 167 aaKnown RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 CNOT9Q92600 299 aaKnown RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 C1GALT1C1Q96EU7 318 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 PYURFQ96I23 114 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 PIGQQ9BRB3 760 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 OR2B2Q9GZK3 357 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 POLR2J2Q9GZM3 115 aaKnown RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 POLR2J3Q9H1A7 115 aaKnown RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 SERINC1Q9NRX5 453 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 DNAJB12Q9NXW2 375 aaKnown RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms