RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TMED9Q9BVK6 235 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 IFT27Q9BW83 186 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 HDHD5Q9BXW7 423 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 TTTY10Q9BZA0 68 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 OR51V1Q9H2C8 321 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 ISG20L2Q9H9L3 353 aaKnown RBP9.82□□□□□ -0.84
CUX1-217ENST00000558836 CBLCQ9ULV8 474 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 STUB1Q9UNE7 303 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 CDH10Q9Y6N8 788 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 SLC35F4A4IF30 521 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 METTL12A8MUP2 240 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 RNH1P13489 461 aaKnown RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 TGM1P22735 817 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CD27P26842 260 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 RELAQ04206 551 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 MINDY4Q4G0A6 757 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 TTLL10Q6ZVT0 673 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 LYSMD2Q8IV50 215 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 Q8N9G6 341 aaPredicted RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 POC5Q8NA72 575 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 OR51Q1Q8NH59 317 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 C16orf52Q8NHV5 167 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 EFHD2Q96C19 240 aaPredicted RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 H2AFY2Q9P0M6 372 aaPredicted RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 DHCR7Q9UBM7 475 aaKnown RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 ZNF223Q9UK11 482 aaPredicted RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 SSR3Q9UNL2 185 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 SATB2Q9UPW6 733 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CFL2Q9Y281 166 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 OR10H1Q9Y4A9 318 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CLDN16Q9Y5I7 305 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 A0A1B0GWA3 101 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 A0A1W2PR77 199 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 KDM4EB2RXH2 506 aaPredicted RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 HRO43593 1189 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 ATP6V1G1O75348 118 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 ZNF217O75362 1048 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 NKX2-2O95096 273 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 LYPD3O95274 346 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 BMP7P18075 431 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CELP19835 753 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 NOS3P29474 1203 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 SDC2P34741 201 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 SLC1A3P43003 542 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 OR1D5P58170 312 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 RPS7P62081 194 aaKnown RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 SMAD4Q13485 552 aaKnown RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 EXOSC6Q5RKV6 272 aaKnown RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 SLC25A30Q5SVS4 291 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 PLEKHG7Q6ZR37 379 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CXXC5Q7LFL8 322 aaKnown RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 LAX1Q8IWV1 398 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 RBM12BQ8IXT5 1001 aaKnown RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 ZNF687Q8N1G0 1237 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 LRRC17Q8N6Y2 441 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CEP19Q96LK0 163 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 DGAT2Q96PD7 388 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 NXF2Q9GZY0 626 aaKnown RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 ANKRD19PQ9H560 264 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CHURC1-FNTBB4DL54 471 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 AQP9O43315 295 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 UPK1BO75841 260 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 IL9P15248 144 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 TBXA2RP21731 343 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 TNFSF8P32971 234 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 FNTBP49356 437 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 FABP5Q01469 135 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 ZNHIT3Q15649 155 aaPredicted RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 ALG10BQ5I7T1 473 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 C3orf38Q5JPI3 329 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 MRGPREQ86SM8 312 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 KLBQ86Z14 1044 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CAMKK1Q8N5S9 505 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 OR51L1Q8NGJ5 315 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 TP53INP1Q96A56 240 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 TCTN2Q96GX1 697 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 HS6ST2Q96MM7 605 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 VSTM2LQ96N03 204 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 TNFRSF13CQ96RJ3 184 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 SMAD5Q99717 465 aaKnown RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 TMEM27Q9HBJ8 222 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CCDC59Q9P031 241 aaKnown RBP9.81□□□□□ -0.84
CUX1-217ENST00000558836 SEC14L4Q9UDX3 406 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 FBXL21Q9UKT6 434 aa9.81□□□□□ -0.84
CUX1-217ENST00000558836 CDC14CA4D256 554 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 SNTNA6NMZ2 147 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 SSX4O60224 188 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 CTNSO60931 367 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 NCR1O76036 304 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 MSL3P1P0C860 447 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 CT45A8P0DMV1 189 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 CT45A9P0DMV2 189 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 SPNP16150 400 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 BCKDHBP21953 392 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 ACAA2P42765 397 aaKnown RBP9.8□□□□□ -0.84
CUX1-217ENST00000558836 FASLGP48023 281 aa9.8□□□□□ -0.84
CUX1-217ENST00000558836 CRYZQ08257 329 aaKnown RBP9.8□□□□□ -0.84
CUX1-217ENST00000558836 HNRNPA0Q13151 305 aaKnown RBP9.8□□□□□ -0.84
CUX1-217ENST00000558836 CT45A2Q5DJT8 189 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms