RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 RTN4RQ9BZR6 473 aa12.42□□□□□ -0.42
SHMT2-234ENST00000557703 PRDM14Q9GZV8 571 aa12.42□□□□□ -0.42
SHMT2-234ENST00000557703 TSPAN10Q9H1Z9 355 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-234ENST00000557703 RUBCNLQ9H714 662 aa12.42□□□□□ -0.42
SHMT2-234ENST00000557703 PAQR5Q9NXK6 330 aaPredicted RBP12.42□□□□□ -0.42
SHMT2-234ENST00000557703 KCNE5Q9UJ90 142 aa12.42□□□□□ -0.42
SHMT2-234ENST00000557703 SLC5A6Q9Y289 635 aa12.42□□□□□ -0.42
SHMT2-234ENST00000557703 MYO7BQ6PIF6 2116 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 CDHR4A6H8M9 788 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 GJE1A6NN92 205 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 AIM2O14862 343 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 PABPC4LP0CB38 370 aaKnown RBP12.41□□□□□ -0.42
SHMT2-234ENST00000557703 BMP7P18075 431 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 ME2P23368 584 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 PCGF2P35227 344 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 GZMMP51124 257 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 PCBP3P57721 371 aaKnown RBP12.41□□□□□ -0.42
SHMT2-234ENST00000557703 CRYZQ08257 329 aaKnown RBP12.41□□□□□ -0.42
SHMT2-234ENST00000557703 MRPL49Q13405 166 aaKnown RBP12.41□□□□□ -0.42
SHMT2-234ENST00000557703 MAPK14Q16539 360 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 VMACQ2NL98 169 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 GXYLT1Q4G148 440 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 C8orf82Q6P1X6 216 aaPredicted RBP12.41□□□□□ -0.42
SHMT2-234ENST00000557703 DHRS4L2Q6PKH6 230 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 CCDC80Q76M96 950 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 POU5F2Q8N7G0 328 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 PRR7Q8TB68 274 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 ZPLD1Q8TCW7 415 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 GPR119Q8TDV5 335 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 ZG16BQ96DA0 208 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 SFXN2Q96NB2 322 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 UCN2Q96RP3 112 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 TIMP4Q99727 224 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 IKZF5Q9H5V7 419 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 MED17Q9NVC6 651 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 OSGIN2Q9Y236 505 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 CARD8Q9Y2G2 431 aa12.41□□□□□ -0.42
SHMT2-234ENST00000557703 SPTBN1Q01082 2364 aaKnown RBP12.4□□□□□ -0.42
SHMT2-234ENST00000557703 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 NPIPA2E9PIF3 369 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 NPIPA3F8WFD2 350 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 NUDT14O95848 222 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 C1QCP02747 245 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 TPOP07202 933 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 CELA3AP09093 270 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 NUDT7P0C024 238 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 LINGO3P0C6S8 592 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 AGAP20933 346 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 APOBEC1P41238 236 aaKnown RBP12.4□□□□□ -0.42
SHMT2-234ENST00000557703 NUDT2P50583 147 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 RAC1P63000 192 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 EEF1A1P68104 462 aaKnown RBP12.4□□□□□ -0.42
SHMT2-234ENST00000557703 CAPRIN1Q14444 709 aaKnown RBP12.4□□□□□ -0.42
SHMT2-234ENST00000557703 EIF2S3LQ2VIR3 472 aaKnown RBP12.4□□□□□ -0.42
SHMT2-234ENST00000557703 PLPPR5Q32ZL2 321 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 ZNF311Q5JNZ3 666 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 WIPI1Q5MNZ9 446 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-234ENST00000557703 MRPL2Q5T653 305 aaKnown RBP12.4□□□□□ -0.42
SHMT2-234ENST00000557703 CBLN3Q6UW01 205 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 YRDCQ86U90 279 aaKnown RBP12.4□□□□□ -0.42
SHMT2-234ENST00000557703 PTOV1Q86YD1 416 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 DOLPP1Q86YN1 238 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 ARHGAP24Q8N264 748 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 FITM2Q8N6M3 262 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 NFKBIDQ8NI38 313 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 MAL2Q969L2 176 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 ZNF583Q96ND8 569 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 PINK1Q9BXM7 581 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 SLC6A15Q9H2J7 730 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 CALHM2Q9HA72 323 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 SPAG4Q9NPE6 437 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 KLHL28Q9NXS3 571 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 ABCD2Q9UBJ2 740 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 ZNF443Q9Y2A4 671 aaPredicted RBP12.4□□□□□ -0.42
SHMT2-234ENST00000557703 PCNX1Q96RV3 2341 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 HEATR5AQ86XA9 2040 aa12.4□□□□□ -0.42
SHMT2-234ENST00000557703 PCNX3Q9H6A9 2034 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 NPIPA5A0A0B4J1W7 369 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 TRGV8A0A0C4DH27 118 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 CLEC18AA5D8T8 446 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 CFAP73A6NFT4 308 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 FAM220BPB1ANY3 271 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 NPIPA7E9PJI5 369 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 SYT5O00445 386 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 UBTFL6P0CB48 400 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-234ENST00000557703 NPIPA8P0DM63 369 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 ESRRAP11474 423 aaPredicted RBP12.39□□□□□ -0.43
SHMT2-234ENST00000557703 CALB2P22676 271 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 ACVR2AP27037 513 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 CLK1P49759 484 aaKnown RBP12.39□□□□□ -0.43
SHMT2-234ENST00000557703 B3GALT5-AS1P59052 145 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 COPZ1P61923 177 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 RABL3Q5HYI8 236 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 PDSS1Q5T2R2 415 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 EEF1A1P5Q5VTE0 462 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 RAET1LQ5VY80 246 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 C16orf89Q6UX73 402 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 CLEC18BQ6UXF7 455 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 RPTNQ6XPR3 784 aa12.39□□□□□ -0.43
SHMT2-234ENST00000557703 FGD2Q7Z6J4 655 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms