RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 RAB33AQ14088 237 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 AGERQ15109 404 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 LHX8Q68G74 356 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 C3P1Q6ZMU1 363 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RASSF6Q6ZTQ3 369 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 METTL3Q86U44 580 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 NRMQ8IXM6 262 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 KRT78Q8N1N4 520 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 C12orf76Q8N812 135 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF614Q8N883 585 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RELL2Q8NC24 303 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SLAIN1Q8ND83 568 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 STK35Q8TDR2 534 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 IRF7Q92985 503 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 GLYATL1Q969I3 302 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SAMD8Q96LT4 415 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ALG8Q9BVK2 526 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ZCCHC2Q9C0B9 1178 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 AICDAQ9GZX7 198 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SPRTNQ9H040 489 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TTYH1Q9H313 450 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 C6orf106Q9H6K1 298 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 WASH6PQ9NQA3 447 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 EXOSC3Q9NQT5 275 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ZC4H2Q9NQZ6 224 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ANKRD10Q9NXR5 420 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 MRPL39Q9NYK5 338 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TNFRSF10DQ9UBN6 386 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RPS6KB2Q9UBS0 482 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ING1Q9UK53 422 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ICKQ9UPZ9 632 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RCE1Q9Y256 329 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 PCDHGA5Q9Y5G8 931 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 STON1Q9Y6Q2 735 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 NUP210Q8TEM1 1887 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 HNRNPCL2B2RXH8 293 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 FOXE1O00358 373 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 OR1F1O43749 312 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 FCMRO60667 390 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 FKTNO75072 461 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 APOC3P02656 99 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 F8A1P23610 371 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 MST1P26927 711 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 MAT2AP31153 395 aaKnown RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 BSGP35613 385 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 MMP12P39900 470 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 GDNFP39905 211 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 VIPR2P41587 438 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 SSR2P43308 183 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 CCR8P51685 355 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 CLDN12P56749 244 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 SNRPNP63162 240 aaKnown RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF33BQ06732 778 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 LASP1Q14847 261 aaKnown RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 C6orf132Q5T0Z8 1188 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 NDUFAF5Q5TEU4 345 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 NXPE4Q6UWF7 544 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF783Q6ZMS7 281 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 BTN2A1Q7KYR7 527 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 C17orf64Q86WR6 236 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 ARL14Q8N4G2 192 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 OR2A12Q8NGT7 310 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 OR5W2Q8NH69 310 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 OR1S1Q8NH92 325 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 RPLP0P6Q8NHW5 317 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 DOK4Q8TEW6 326 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 PTP4A1Q93096 173 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 KISS1RQ969F8 398 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 CHFRQ96EP1 664 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 PEX11GQ96HA9 241 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 PGLYRP3Q96LB9 341 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 PRRC1Q96M27 445 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF578Q96N58 590 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 BBS4Q96RK4 519 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 NPAS1Q99742 590 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 TRMT61BQ9BVS5 477 aaKnown RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 GLIPR2Q9H4G4 154 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 RETREG1Q9H6L5 497 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 CACYBPQ9HB71 228 aaKnown RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 ASB6Q9NWX5 421 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 BABAM2Q9NXR7 383 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 MARK1Q9P0L2 795 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 EXOGQ9Y2C4 368 aaKnown RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 IRAK3Q9Y616 596 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 DOCK9Q9BZ29 2069 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 ANKRD61A6NGH8 418 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 C4orf51C9J302 202 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 H7BY64 318 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 PDCD5O14737 125 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 ARPC1BO15143 372 aaKnown RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 ARPC5O15511 151 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 SUSD5O60279 629 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 ABLIM3O94929 683 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 H2BFSP57053 126 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 HTR4Q13639 388 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 HLXQ14774 488 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-214ENST00000552783 FAM74A1Q5RGS3 127 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 CLVS2Q5SYC1 327 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 SLC6A19Q695T7 634 aa4.51□□□□□ -1.69
LIMA1-214ENST00000552783 SLC25A25Q6KCM7 469 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms