RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 DDX39BQ13838 428 aaKnown RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 ARHGEF7Q14155 803 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 TOMM20Q15388 145 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 C18orf21Q32NC0 220 aaPredicted RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 LBHQ53QV2 105 aaPredicted RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 PLEKHS1Q5SXH7 462 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 MARCH8Q5T0T0 291 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 SLC25A25Q6KCM7 469 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 TCTN3Q6NUS6 607 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 TAPT1Q6NXT6 567 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 FBXL22Q6P050 247 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 LPCAT3Q6P1A2 487 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 SMARCD3Q6STE5 483 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 ZNF322Q6U7Q0 402 aaPredicted RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 C5orf46Q6UWT4 87 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 TMIGD1Q6UXZ0 262 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 C17orf107Q6ZR85 190 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 OVCH1Q7RTY7 1134 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 FAM122BQ7Z309 247 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 WDR53Q7Z5U6 358 aaPredicted RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 PXKQ7Z7A4 578 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 SERPINA9Q86WD7 417 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 APOBEC3FQ8IUX4 373 aaKnown RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 DENND1CQ8IV53 801 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 CLECL1Q8IZS7 167 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 COQ8AQ8NI60 647 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 SLC2A12Q8TD20 617 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 GANCQ8TET4 914 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 TMEM40Q8WWA1 233 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 SORCS1Q8WY21 1168 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 HSD17B8Q92506 261 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 CNOT9Q92600 299 aaKnown RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 TMEM41AQ96HV5 264 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 CXorf58Q96LI9 332 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 ABHD1Q96SE0 405 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 TEX101Q9BY14 249 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 GSDMCQ9BYG8 508 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 GPR62Q9BZJ7 368 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 SEMA4CQ9C0C4 833 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 EGLN1Q9GZT9 426 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 ALX4Q9H161 411 aaPredicted RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 ESRP2Q9H6T0 727 aaKnown RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 BRD9Q9H8M2 597 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 SARS2Q9NP81 518 aaKnown RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 SLC6A20Q9NP91 592 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 MYOZ1Q9NP98 299 aaPredicted RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 TRIM36Q9NQ86 728 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 KLHL1Q9NR64 748 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 MAN2C1Q9NTJ4 1040 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 ZFP57Q9NU63 452 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 TMEM30AQ9NV96 361 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 TMEM161AQ9NX61 479 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 TEX10Q9NXF1 929 aaPredicted RBP6.24□□□□□ -1.41
USP28-207ENST00000538475 ARL15Q9NXU5 204 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 TAS2R8Q9NYW2 309 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 FBXL2Q9UKC9 423 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 SLC9A8Q9Y2E8 581 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 CHST2Q9Y4C5 530 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 BACE2Q9Y5Z0 518 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 FRMPD3Q5JV73 1810 aa6.24□□□□□ -1.41
USP28-207ENST00000538475 VWA8A3KMH1 1905 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 DENND4CQ5VZ89 1909 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.23□□□□□ -1.41
USP28-207ENST00000538475 TMEM218A2RU14 115 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 RFPL4AA6NLU0 287 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 ZNF729A6NN14 1252 aaPredicted RBP6.23□□□□□ -1.41
USP28-207ENST00000538475 DISC1C4P0D8 188 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 RFPL4AL1F8VTS6 287 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 UBE2CO00762 179 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 PTGESO14684 152 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 FFAR1O14842 300 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 MID1O15344 667 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 POP7O75817 140 aaKnown RBP6.23□□□□□ -1.41
USP28-207ENST00000538475 UBXN7O94888 489 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 OR2F2O95006 317 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 NDUFB6O95139 128 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 LRATO95237 230 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 MT-ND5P03915 603 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 RLN2P04090 185 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 ATP1B1P05026 303 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 ANXA4P09525 319 aaPredicted RBP6.23□□□□□ -1.41
USP28-207ENST00000538475 RAB40ALP0C0E4 278 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 ETFAP13804 333 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 PRF1P14222 555 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 POU2F1P14859 743 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 RAC2P15153 192 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 CELP19835 753 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 RAB3BP20337 219 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 CNR1P21554 472 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 ITGB8P26012 769 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 ACRV1P26436 265 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 HOXD9P28356 352 aaPredicted RBP6.23□□□□□ -1.41
USP28-207ENST00000538475 MPGP29372 298 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 OR1E2P47887 323 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 CSNK1DP48730 415 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 CRYBB1P53674 252 aaPredicted RBP6.23□□□□□ -1.41
USP28-207ENST00000538475 CDH11P55287 796 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 STARD6P59095 220 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 KIAA1024LP59773 190 aa6.23□□□□□ -1.41
USP28-207ENST00000538475 RAB4BP61018 213 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms