RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 IFT27Q9BW83 186 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 RNF32Q9H0A6 362 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 POT1Q9NUX5 634 aa19.68■□□□□ 0.74
VPS28-205ENST00000526204 GALR3O60755 368 aaPredicted RBP19.67■□□□□ 0.74
VPS28-205ENST00000526204 SAGP10523 405 aaPredicted RBP19.67■□□□□ 0.74
VPS28-205ENST00000526204 PRKAR1AP10644 381 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 S100A1P23297 94 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 ACSL1P33121 698 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 GABRA3P34903 492 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 SHC2P98077 582 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 TRAM1Q15629 374 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 FIGNL1Q6PIW4 674 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 PRSS41Q7RTY9 318 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 TMEFF1Q8IYR6 380 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 SLC37A3Q8NCC5 494 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 SLC7A6Q92536 515 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 CTHRC1Q96CG8 243 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 AHCYL2Q96HN2 611 aaKnown RBP19.67■□□□□ 0.74
VPS28-205ENST00000526204 ENKD1Q9H0I2 346 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 MED20Q9H944 212 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 RBFOX1Q9NWB1 397 aaKnown RBP19.67■□□□□ 0.74
VPS28-205ENST00000526204 BAIAP2Q9UQB8 552 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 SLC35A3Q9Y2D2 325 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 SCN3AQ9NY46 2000 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 MT-ND5P03915 603 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 FUT1P19526 365 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 DRD5P21918 477 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 AKT2P31751 481 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 PBX2P40425 430 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 MLLT3P42568 568 aaPredicted RBP19.67■□□□□ 0.74
VPS28-205ENST00000526204 CAPZA2P47755 286 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 MGAT2Q10469 447 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 INSL4Q14641 139 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 KLHL12Q53G59 568 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 B3GLCTQ6Y288 498 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 TMEM99Q8N816 258 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 TMEM52Q8NDY8 209 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 DOK4Q8TEW6 326 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 PTP4A1Q93096 173 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 KISS1RQ969F8 398 aaPredicted RBP19.67■□□□□ 0.74
VPS28-205ENST00000526204 SENP5Q96HI0 755 aaPredicted RBP19.67■□□□□ 0.74
VPS28-205ENST00000526204 TEAD3Q99594 435 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 TIMP4Q99727 224 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 NDC1Q9BTX1 674 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 TRANK1O15050 2925 aa19.67■□□□□ 0.74
VPS28-205ENST00000526204 A0A0J9YY10 115 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 RIIAD1A6NNX1 92 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 CSF2P04141 144 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 HLA-DMAP28067 261 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 TAS2R43P59537 309 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 EXOSC7Q15024 291 aaKnown RBP19.66■□□□□ 0.74
VPS28-205ENST00000526204 KIAA1324Q6UXG2 1013 aaKnown RBP19.66■□□□□ 0.74
VPS28-205ENST00000526204 SLC43A2Q8N370 569 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 Q8N9G6 341 aaPredicted RBP19.66■□□□□ 0.74
VPS28-205ENST00000526204 DUSP18Q8NEJ0 188 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 OR4C6Q8NH72 309 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 NPIPA5A0A0B4J1W7 369 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 NPIPA7E9PJI5 369 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 NKX2-2O95096 273 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 NPIPA8P0DM63 369 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 MRPS15P82914 257 aaKnown RBP19.66■□□□□ 0.74
VPS28-205ENST00000526204 HYAL1Q12794 435 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 P2RY14Q15391 338 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 CA13Q8N1Q1 262 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 CSNK1A1LQ8N752 337 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 OR10H4Q8NGA5 316 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 OR5T3Q8NGG3 340 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 OR13C2Q8NGS9 318 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 OR5W2Q8NH69 310 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 HOXB13Q92826 284 aaPredicted RBP19.66■□□□□ 0.74
VPS28-205ENST00000526204 KCTD12Q96CX2 325 aaKnown RBP19.66■□□□□ 0.74
VPS28-205ENST00000526204 TMEM43Q9BTV4 400 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 HCAR1Q9BXC0 346 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 CPNE7Q9UBL6 633 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 MALT1Q9UDY8 824 aa19.66■□□□□ 0.74
VPS28-205ENST00000526204 RFXAPO00287 272 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 CHP2O43745 196 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 PTP4A3O75365 173 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 GUSBP08236 651 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 PVRP15151 417 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 LSSP48449 732 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 RPS7P62081 194 aaKnown RBP19.65■□□□□ 0.74
VPS28-205ENST00000526204 ADAM15Q13444 863 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 THSD4Q6ZMP0 1018 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 SLC2A12Q8TD20 617 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 UBL7Q96S82 380 aaPredicted RBP19.65■□□□□ 0.74
VPS28-205ENST00000526204 EVA1BQ9NVM1 165 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 HRASLS2Q9NWW9 162 aa19.65■□□□□ 0.74
VPS28-205ENST00000526204 SIRT4Q9Y6E7 314 aaPredicted RBP19.65■□□□□ 0.74
VPS28-205ENST00000526204 ZC3H12DA2A288 527 aaKnown RBP19.64■□□□□ 0.74
VPS28-205ENST00000526204 FAM25AB3EWG3 89 aa19.64■□□□□ 0.74
VPS28-205ENST00000526204 FAM25CB3EWG5 89 aa19.64■□□□□ 0.74
VPS28-205ENST00000526204 FAM25GB3EWG6 89 aa19.64■□□□□ 0.74
VPS28-205ENST00000526204 SGK494L7N484 410 aa19.64■□□□□ 0.74
VPS28-205ENST00000526204 PLPP2O43688 288 aa19.64■□□□□ 0.74
VPS28-205ENST00000526204 CT62P0C5K7 136 aa19.64■□□□□ 0.74
VPS28-205ENST00000526204 SLC35E2P0CK97 266 aa19.64■□□□□ 0.74
VPS28-205ENST00000526204 RCVRNP35243 200 aa19.64■□□□□ 0.74
VPS28-205ENST00000526204 RBM34P42696 430 aaKnown RBP19.64■□□□□ 0.74
VPS28-205ENST00000526204 HBMQ6B0K9 141 aa19.64■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms