RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MFAP2P55001 183 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SLC12A3P55017 1021 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CARD18P57730 90 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 RAB4BP61018 213 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 RPS8P62241 208 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 ASIC1P78348 528 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 HPCAP84074 193 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 HTD2P86397 168 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 RELAQ04206 551 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 RIPPLY1Q0D2K3 151 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 BFSP1Q12934 665 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SLC17A1Q14916 467 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 PRR4Q16378 134 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SGCBQ16585 318 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 MEP1BQ16820 701 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 PARP6Q2NL67 630 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 METTL21CQ5VZV1 264 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 PTRHD1Q6GMV3 140 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 ZNF770Q6IQ21 691 aaPredicted RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 PPP1R2P3Q6NXS1 205 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 PRMT9Q6P2P2 845 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 TFAP2EQ6VUC0 442 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 TPGS1Q6ZTW0 290 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 TRPM8Q7Z2W7 1104 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 PIWIL3Q7Z3Z3 882 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 ADAMTSL2Q86TH1 951 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 FAM228AQ86W67 206 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 TTC5Q8N0Z6 440 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SIX6OS1Q8N1H7 587 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 PYROXD2Q8N2H3 581 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CADM2Q8N3J6 435 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 FBXW8Q8N3Y1 598 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 NATD1Q8N6N6 113 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CCNYL1Q8N7R7 359 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 ATP6V0D2Q8N8Y2 350 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 GMCL1P1Q8NEA9 526 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 OR1K1Q8NGR3 316 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 NCOA7Q8NI08 942 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 ZNF461Q8TAF7 563 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 FNDC8Q8TC99 324 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SCFD1Q8WVM8 642 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 ASZ1Q8WWH4 475 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 RIT1Q92963 219 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 RAB7BQ96AH8 199 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 LRRC39Q96DD0 335 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 IFT74Q96LB3 600 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 FAM111AQ96PZ2 611 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SLC29A1Q99808 456 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 BCL7BQ9BQE9 202 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 THUMPD3Q9BV44 507 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 NTMT1Q9BV86 223 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 TIPINQ9BVW5 301 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 ACAT2Q9BWD1 397 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 NFKBIZQ9BYH8 718 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 POLR1EQ9GZS1 481 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 C1orf21Q9H246 121 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CARD9Q9H257 536 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 LHX5Q9H2C1 402 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 TMEM245Q9H330 911 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SYNDIG1Q9H7V2 258 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 TRIM45Q9H8W5 580 aaPredicted RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 GORASP2Q9H8Y8 452 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SLC40A1Q9NP59 571 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 MRPL40Q9NQ50 206 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 RPRD1BQ9NQG5 326 aaKnown RBP1.54□□□□□ -2.16
NUP54-208ENST00000508604 STMN3Q9NZ72 180 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 SEC14L4Q9UDX3 406 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 FAM153AQ9UHL3 310 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 ERVK-19Q9WJR5 959 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 IFT52Q9Y366 437 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 L3MBTL1Q9Y468 752 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 LRRC42Q9Y546 428 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 HEY1Q9Y5J3 304 aa1.54□□□□□ -2.16
NUP54-208ENST00000508604 CAMSAP2Q08AD1 1489 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 NCOA2Q15596 1464 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 CASZ1Q86V15 1759 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 GRIN2DO15399 1336 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 ATP8B3O60423 1300 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 PHLPP2Q6ZVD8 1323 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 A0A1B0GTQ1 180 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 RGSL1A5PLK6 1076 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 KRT87PA6NCN2 255 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 SMCO2A6NFE2 343 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 NCF1BA6NI72 391 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 ZSCAN5BA6NJL1 495 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 TMEM210A6NLX4 147 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 TRPC5OSA6NMA1 111 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 NCF1CA8MVU1 366 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 E9PBE3 544 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 H3BQF6 201 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 K7EPI3 171 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 K7ERQ8 282 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 SLC30A4O14863 429 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 POLR1CO15160 346 aaPredicted RBP1.53□□□□□ -2.16
NUP54-208ENST00000508604 PFDN6O15212 129 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 PSMD3O43242 534 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 PPIP5K2O43314 1243 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 TRAPPC3O43617 180 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 SNAI2O43623 268 aa1.53□□□□□ -2.16
NUP54-208ENST00000508604 SMPD2O60906 423 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms