RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PDGFRLQ15198 375 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 GXYLT1Q4G148 440 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 AFMIDQ63HM1 303 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 IDO2Q6ZQW0 420 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 SLC9B2Q86UD5 537 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 NKAIN4Q8IVV8 208 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 ZFP82Q8N141 532 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 TRAM1L1Q8N609 369 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 OR56A3Q8NH54 315 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 CD300LFQ8TDQ1 290 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 C5orf34Q96MH7 638 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 RNF32Q9H0A6 362 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 PCBD2Q9H0N5 130 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 ERVMER34-1Q9H9K5 563 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 WASH6PQ9NQA3 447 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 LAMP5Q9UJQ1 280 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 LOXHD1Q8IVV2 1947 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 A0A087WUU8 490 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 TVP23AA6NH52 213 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 RGS13O14921 159 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 TXNL1O43396 289 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 EMC8O43402 210 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 ZNF14P17017 642 aaPredicted RBP12.65□□□□□ -0.38
USP42-206ENST00000479544 CFL1P23528 166 aaKnown RBP12.65□□□□□ -0.38
USP42-206ENST00000479544 CTNNB1P35222 781 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 GK2Q14410 553 aaPredicted RBP12.65□□□□□ -0.38
USP42-206ENST00000479544 TEAD2Q15562 447 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 YIF1BQ5BJH7 314 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 YOD1Q5VVQ6 348 aaPredicted RBP12.65□□□□□ -0.38
USP42-206ENST00000479544 ZNF227Q86WZ6 799 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 KIAA1958Q8N8K9 716 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 SYNPRQ8TBG9 265 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 C3orf49Q96BT1 292 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 OR14A2Q96R54 314 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 F5H5P2 479 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 CR2P20023 1033 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 NPR2P20594 1047 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 PPM1AP35813 382 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 CRYBB2P43320 205 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 LSM11P83369 360 aaKnown RBP eCLIP12.65□□□□□ -0.38
USP42-206ENST00000479544 IRF3Q14653 427 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 HBMQ6B0K9 141 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 VASNQ6EMK4 673 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 OR4C11Q6IEV9 310 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 VITQ6UXI7 678 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 ZNF248Q8NDW4 579 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 OR2L3Q8NG85 312 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 OR13C2Q8NGS9 318 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 EID2BQ96D98 161 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 ZNF416Q9BWM5 594 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 ACOXLQ9NUZ1 547 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 KIAA1217Q5T5P2 1943 aa12.65□□□□□ -0.38
USP42-206ENST00000479544 H0YIV9 168 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 YY2O15391 372 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 UGDHO60701 494 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 SC5DO75845 299 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 C1SP09871 688 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 CBR1P16152 277 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 LAG3P18627 525 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 CDNFQ49AH0 187 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 TEX261Q6UWH6 196 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 ZNF546Q86UE3 836 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 GTPBP8Q8N3Z3 284 aaPredicted RBP12.65□□□□□ -0.39
USP42-206ENST00000479544 ABHD4Q8TB40 342 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 C2CD4CQ8TF44 421 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 SEMA4CQ9C0C4 833 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 CHMP1AQ9HD42 196 aaPredicted RBP12.65□□□□□ -0.39
USP42-206ENST00000479544 MYNNQ9NPC7 610 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 C1GALT1Q9NS00 363 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 IER3IP1Q9Y5U9 82 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 U3KQ87 197 aa12.65□□□□□ -0.39
USP42-206ENST00000479544 PHIPQ8WWQ0 1821 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 DCDC2BA2VCK2 349 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 SCO2O43819 266 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 DOK2O60496 412 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 HLA-FP30511 346 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 RBM34P42696 430 aaKnown RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 OR3A2P47893 321 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 USF2Q15853 346 aaPredicted RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 ZNF79Q15937 498 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 ZNF805Q5CZA5 627 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 BPHLQ86WA6 291 aaPredicted RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 C7orf61Q8IZ16 206 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 CBARPQ8N350 705 aaPredicted RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 CPA6Q8N4T0 437 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 OR10K1Q8NGX5 313 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 RNASE11Q8TAA1 199 aaKnown RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 TMEM255BQ8WV15 326 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 ACOT11Q8WXI4 607 aaPredicted RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 DVL3Q92997 716 aaPredicted RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 FCRL1Q96LA6 429 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 ZNF285Q96NJ3 590 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 TRIM2Q9C040 744 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 ZNF768Q9H5H4 540 aaKnown RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 TRDV1A0A1B0GX56 115 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 EIF4EP06730 217 aaKnown RBP12.64□□□□□ -0.39
USP42-206ENST00000479544 SFTPBP07988 381 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 ACRP10323 421 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 IL1RNP18510 177 aa12.64□□□□□ -0.39
USP42-206ENST00000479544 FUT1P19526 365 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms