RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 NID1P14543 1247 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 SHC1P29353 583 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 AGTR1P30556 359 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 CLDN8P56748 225 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 HBA1P69905 142 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 EMX2Q04743 252 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 ZNF239Q16600 458 aaKnown RBP14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 SMU1Q2TAY7 513 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 BEX5Q5H9J7 111 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 BHLHB9Q6PI77 547 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 STK32CQ86UX6 486 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 NUDCD3Q8IVD9 361 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 P3H2Q8IVL5 708 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 FBXO27Q8NI29 283 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 GPR119Q8TDV5 335 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 CPNE4Q96A23 557 aaPredicted RBP14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 ZIM3Q96PE6 472 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 OR7D2Q96RA2 312 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 CCL19Q99731 98 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 OR10A4Q9H209 315 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 TIGARQ9NQ88 270 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 NOP53Q9NZM5 478 aaKnown RBP14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 DTNAQ9Y4J8 743 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 GPC6Q9Y625 555 aaPredicted RBP14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 GJE1A6NN92 205 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 GTPBP1O00178 669 aaKnown RBP14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 ZNF195O14628 629 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 KLF4O43474 513 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 INHBBP09529 407 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 SOAT1P35610 550 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 RNF144AP50876 292 aaPredicted RBP14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 RNPS1Q15287 305 aaKnown RBP14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 Q5PR19 223 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 WDR93Q6P2C0 686 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 HEATR5AQ86XA9 2040 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 OR5AK3PQ8NH89 298 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 PPP1R14CQ8TAE6 165 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 RNF128Q8TEB7 428 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 ROBO4Q8WZ75 1007 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 REXO5Q96IC2 774 aaKnown RBP14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 MRGPRX4Q96LA9 322 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 SDF2Q99470 211 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 SRXN1Q9BYN0 137 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 GPR52Q9Y2T5 361 aa14.79□□□□□ -0.04
CCDC28B-204ENST00000469003 DSCAMO60469 2012 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 DUXAA6NLW8 204 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 EIF4E2O60573 245 aaKnown RBP14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 NTN1O95631 604 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 AK1P00568 194 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 PRKCAP17252 672 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 PSMB1P20618 241 aaKnown RBP14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 ADSLP30566 484 aaPredicted RBP14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 TOMM34Q15785 309 aaPredicted RBP14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 PGS1Q32NB8 556 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 NDUFAF6Q330K2 333 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 TMEM176BQ3YBM2 270 aaPredicted RBP14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 PRSS57Q6UWY2 283 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 ZNF614Q8N883 585 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 OR5D16Q8NGK9 328 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 ARSGQ96EG1 525 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 PKNOX2Q96KN3 472 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 ACTR6Q9GZN1 396 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 NMUR2Q9GZQ4 415 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 C12orf49Q9H741 205 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 ZNF395Q9H8N7 513 aaPredicted RBP14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 GP6Q9HCN6 339 aa14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 NSD1Q96L73 2696 aaPredicted RBP14.78□□□□□ -0.04
CCDC28B-204ENST00000469003 ZNF264O43296 627 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 ITM2AO43736 263 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 SERPINE1P05121 402 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 UBL4AP11441 157 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 MATN1P21941 496 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 NR1H2P55055 460 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 ABCE1P61221 599 aaKnown RBP14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 RPS26P62854 115 aaKnown RBP14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 SELENBP1Q13228 472 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 PDCD2Q16342 344 aaPredicted RBP14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 SLC25A53Q5H9E4 307 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 TMEM201Q5SNT2 666 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 OR4F3Q6IEY1 312 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 FCRLAQ7L513 359 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 C6orf120Q7Z4R8 191 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 CLECL1Q8IZS7 167 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 MREGQ8N565 214 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 TMCO5AQ8N6Q1 288 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 ZNF781Q8N8C0 355 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 TOR1AIP2Q8NFQ8 470 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 OR5W2Q8NH69 310 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 ZFP90Q8TF47 636 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 ABHD3Q8WU67 409 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 SLC35G5Q96KT7 338 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 SMR3AQ99954 134 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 SERHL2Q9H4I8 314 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 COQ10BQ9H8M1 238 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 KLHL13Q9P2N7 655 aa14.77□□□□□ -0.05
CCDC28B-204ENST00000469003 RNF103-CHMP3A0A140T963 221 aa14.76□□□□□ -0.05
CCDC28B-204ENST00000469003 WDR91A4D1P6 747 aa14.76□□□□□ -0.05
CCDC28B-204ENST00000469003 SERINC4A6NH21 518 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms