RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 NTRK2Q16620 822 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 RFX4Q33E94 735 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 ZIK1Q3SY52 487 aaPredicted RBP6.09□□□□□ -1.43
VPS41-204ENST00000413141 SLC36A3Q495N2 470 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 DCST1Q5T197 706 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 PGBD2Q6P3X8 592 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 PODNL1Q6PEZ8 512 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 ZNF613Q6PF04 617 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 CBLN3Q6UW01 205 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 GALNT5Q7Z7M9 940 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 MARCH3Q86UD3 253 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 NKAIN4Q8IVV8 208 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 LINC00471Q8N535 108 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 TMCO5AQ8N6Q1 288 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 LSMEM1Q8N8F7 131 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 AQP11Q8NBQ7 271 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 TOR1AIP2Q8NFQ8 470 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 OR4K5Q8NGD3 323 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 OR5M3Q8NGP4 307 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 PHOSPHO1Q8TCT1 267 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 GRHL3Q8TE85 626 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 TMEM255BQ8WV15 326 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 ACOT11Q8WXI4 607 aaPredicted RBP6.09□□□□□ -1.43
VPS41-204ENST00000413141 TTC9Q92623 222 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 TFAP2CQ92754 450 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 SLC38A4Q969I6 547 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 TMCO6Q96DC7 493 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 NXPE2Q96DL1 559 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 SPACA9Q96E40 222 aaPredicted RBP6.09□□□□□ -1.43
VPS41-204ENST00000413141 IP6K3Q96PC2 410 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 NODALQ96S42 347 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 FEVQ99581 238 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 NIPSNAP1Q9BPW8 284 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 PRSS27Q9BQR3 290 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 ZNF559Q9BR84 538 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 GABARAPL3Q9BY60 117 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 ANKRD60Q9BZ19 345 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 TRIM2Q9C040 744 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 TOR3AQ9H497 397 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 ZBTB20Q9HC78 741 aaPredicted RBP6.09□□□□□ -1.43
VPS41-204ENST00000413141 PAPOLBQ9NRJ5 636 aaKnown RBP6.09□□□□□ -1.43
VPS41-204ENST00000413141 SLC7A7Q9UM01 511 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 CARD8Q9Y2G2 431 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 POFUT2Q9Y2G5 429 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 ORC6Q9Y5N6 252 aa6.09□□□□□ -1.43
VPS41-204ENST00000413141 A0A087WUU8 490 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 A0A1B0GWA3 101 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 DCDC2BA2VCK2 349 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 H0YAE9 185 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 GTPBP1O00178 669 aaKnown RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 HCRTR2O43614 444 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 CHP2O43745 196 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 OR10H3O60404 316 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 EIF4E2O60573 245 aaKnown RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 OR6B1O95007 311 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 ANGPTL1O95841 491 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 GNAO1P09471 354 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 CDH2P19022 906 aaPredicted RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 ENDOUP21128 410 aaKnown RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 SDHBP21912 280 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 MST1P26927 711 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 RYKP34925 604 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 SLC6A8P48029 635 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 SSR4P51571 173 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 CCR4P51679 360 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 GAS1P54826 345 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 UGT2B15P54855 530 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 ADARB1P78563 741 aaKnown RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 LSM11P83369 360 aaKnown RBP eCLIP6.08□□□□□ -1.44
VPS41-204ENST00000413141 IL1RL1Q01638 556 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 FOXD4Q12950 439 aaPredicted RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 MED21Q13503 144 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 ZNF791Q3KP31 576 aaPredicted RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 DCAF10Q5QP82 559 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 SWT1Q5T5J6 900 aaKnown RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 FCRLBQ6BAA4 426 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 H3F3CQ6NXT2 135 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 OPN5Q6U736 354 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 ZNF730Q6ZMV8 503 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 WDR88Q6ZMY6 472 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 USP51Q70EK9 711 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 NUP54Q7Z3B4 507 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 VASH2Q86V25 355 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 RPS19BP1Q86WX3 136 aaKnown RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 MISPQ8IVT2 679 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 APLFQ8IW19 511 aaPredicted RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 DND1Q8IYX4 353 aaKnown RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 PARP8Q8N3A8 854 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 CADM2Q8N3J6 435 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 MARVELD2Q8N4S9 558 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 DHRSXQ8N5I4 330 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 OR10G3Q8NGC4 313 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 BRIX1Q8TDN6 353 aaKnown RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 CYGBQ8WWM9 190 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 ASB15Q8WXK1 588 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 GTPBP3Q969Y2 492 aaKnown RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 C3orf49Q96BT1 292 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 SH3YL1Q96HL8 342 aaPredicted RBP6.08□□□□□ -1.44
VPS41-204ENST00000413141 CNBD2Q96M20 576 aa6.08□□□□□ -1.44
VPS41-204ENST00000413141 KLHDC3Q9BQ90 382 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms