RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 MRPS35P82673 323 aaKnown RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 RHAGQ02094 409 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ABHD18Q0P651 414 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 CCNIQ14094 377 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 KPNB1Q14974 876 aaKnown RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 RGNQ15493 299 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 CDSNQ15517 529 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 MED22Q15528 200 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 TRMT12Q53H54 448 aaKnown RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 ZNF628Q5EBL2 1059 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.28□□□□□ -1.88
MCF2-202ENST00000370573 ARHGAP40Q5TG30 622 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 FAM69BQ5VUD6 431 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 SAXO2Q658L1 398 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 FAM199XQ6PEV8 388 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 TMEM107Q6UX40 140 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 SHISA6Q6ZSJ9 500 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 C6orf120Q7Z4R8 191 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 IFNEQ86WN2 208 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 RNF130Q86XS8 419 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 PTOV1Q86YD1 416 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ZNF595Q8IYB9 648 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 PRSS58Q8IYP2 241 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ARHGAP24Q8N264 748 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 LRRC25Q8N386 305 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 TSLPQ969D9 159 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 CCDC124Q96CT7 223 aaKnown RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 NEURL3Q96EH8 262 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 GIMAP5Q96F15 307 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 C16orf58Q96GQ5 468 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 MAGED4Q96JG8 741 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 RAB3IPQ96QF0 476 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 CMKLR1Q99788 373 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 SLC35A5Q9BS91 424 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ALOXE3Q9BYJ1 711 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 STRADBQ9C0K7 418 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 MMADHCQ9H3L0 296 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 PRTFDC1Q9NRG1 225 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 PISDQ9UG56 409 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ENTPD4Q9Y227 616 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 POMPQ9Y244 141 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 MYRFQ9Y2G1 1151 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 L3MBTL1Q9Y468 752 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 CCDC187A0A096LP49 1063 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 C15orf38-AP3S2A0A0A6YYH1 394 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 RNF103-CHMP3A0A140T963 221 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 AQP7P3A6NL99 342 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 VSTM2BA6NLU5 285 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 A8MUA0 341 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 UPK1AO00322 258 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 PLOD2O00469 737 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 SLC30A4O14863 429 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 EMC8O43402 210 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ADAM20O43506 726 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 GCM2O75603 506 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 ATP1B1P05026 303 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 HBQ1P09105 142 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ETFAP13804 333 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 NCK1P16333 377 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 DDX5P17844 614 aaKnown RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 TNFRSF1AP19438 455 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 SOAT1P35610 550 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ARL3P36405 182 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 MEOX1P50221 254 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 RPS6KA3P51812 740 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 BPIFB3P59826 476 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 EEF1A2Q05639 463 aaKnown RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 EXOSC7Q15024 291 aaKnown RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 MAPK11Q15759 364 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ZMAT1Q5H9K5 638 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 INO80CQ6PI98 192 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 CEACAM20Q6UY09 585 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 TMEM64Q6YI46 380 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ZNF517Q6ZMY9 492 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 TIPARPQ7Z3E1 657 aaKnown RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 NET1Q7Z628 596 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 ARPINQ7Z6K5 226 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 HORMAD2Q8N7B1 307 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 PLPP5Q8NEB5 264 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 OR52N2Q8NGI0 321 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 OR5M3Q8NGP4 307 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 ZFP28Q8NHY6 868 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 NFKBIDQ8NI38 313 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 SFXN5Q8TD22 340 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 PTPMT1Q8WUK0 201 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 CTHRC1Q96CG8 243 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 OR1F2PQ96R84 312 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 NR1H4Q96RI1 486 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 ADOQ96SZ5 270 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 SH3GL1Q99961 368 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 KCTD14Q9BQ13 255 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 ECSITQ9BQ95 431 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 SLC7A5P2Q9GIP4 190 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 VN1R1Q9GZP7 353 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 MUC13Q9H3R2 512 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 TMPRSS5Q9H3S3 457 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 CXorf21Q9HAI6 301 aa3.28□□□□□ -1.88
MCF2-202ENST00000370573 MKKSQ9NPJ1 570 aaPredicted RBP3.28□□□□□ -1.88
MCF2-202ENST00000370573 DECR2Q9NUI1 292 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms