RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ZNF559Q9BR84 538 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 SEMA4CQ9C0C4 833 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 ENOPH1Q9UHY7 261 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 BLOC1S6Q9UL45 172 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 ASPMQ8IZT6 3477 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 TMEM200CA6NKL6 621 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 GNB5O14775 395 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 TSPAN2O60636 221 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 ADRA2AP08913 450 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 CCKBRP32239 447 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 MAP2K4P45985 399 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 GIPRP48546 466 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 INSM1Q01101 510 aaPredicted RBP16.91■□□□□ 0.3
USP39-201ENST00000323701 HLA-DQA1Q5Y7H0 255 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 PAPD4Q6PIY7 484 aaKnown RBP16.91■□□□□ 0.3
USP39-201ENST00000323701 PTCHD4Q6ZW05 846 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 AHSA2Q719I0 299 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 SLC29A4Q7RTT9 530 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 CADM2Q8N3J6 435 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 GALNT6Q8NCL4 622 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 FAM71CQ8NEG0 241 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 TMEM239Q8WW34 195 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 DPH1Q9BZG8 443 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 CCDC90BQ9GZT6 254 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 SELENONQ9NZV5 590 aa16.91■□□□□ 0.3
USP39-201ENST00000323701 KNTC1P50748 2209 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 A0A1W2PNU3 283 aaPredicted RBP16.9■□□□□ 0.3
USP39-201ENST00000323701 MAN1A2O60476 641 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 PCSK6P29122 969 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 MASP1P48740 699 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 PSMD4P55036 377 aaKnown RBP16.9■□□□□ 0.3
USP39-201ENST00000323701 FXYD6P3P58550 94 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 CDK5Q00535 292 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 EMX1Q04741 257 aaPredicted RBP16.9■□□□□ 0.3
USP39-201ENST00000323701 CLEC12AQ5QGZ9 265 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 ZNF613Q6PF04 617 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 TMEM205Q6UW68 189 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 B3GNT6Q6ZMB0 384 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 CACTIN-AS1Q8N1I8 211 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 LSMEM1Q8N8F7 131 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 METTL21AQ8WXB1 218 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 MR1Q95460 341 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 OMA1Q96E52 524 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 SIGLEC11Q96RL6 698 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 ENKD1Q9H0I2 346 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 GPR83Q9NYM4 423 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 CARD8Q9Y2G2 431 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 PCNX3Q9H6A9 2034 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 PCNX2A6NKB5 2137 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 ZNF292O60281 2723 aa16.9■□□□□ 0.3
USP39-201ENST00000323701 TO15178 435 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 PRKYO43930 277 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 KLF7O75840 302 aaPredicted RBP16.89■□□□□ 0.3
USP39-201ENST00000323701 MT-ND2P03891 347 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 UMODP07911 640 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 FPR3P25089 353 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 C21orf33P30042 268 aaPredicted RBP16.89■□□□□ 0.3
USP39-201ENST00000323701 PLCXD2Q0VAA5 305 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 SKP2Q13309 424 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 BORAQ6PGQ7 559 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 ZNF517Q6ZMY9 492 aaPredicted RBP16.89■□□□□ 0.3
USP39-201ENST00000323701 CPEB2Q7Z5Q1 589 aaKnown RBP16.89■□□□□ 0.3
USP39-201ENST00000323701 DEPDC4Q8N2C3 294 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 B4GALNT2Q8NHY0 566 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 PHOSPHO1Q8TCT1 267 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 POLR2J2Q9GZM3 115 aaKnown RBP16.89■□□□□ 0.3
USP39-201ENST00000323701 TMEM27Q9HBJ8 222 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 TVP23BQ9NYZ1 205 aa16.89■□□□□ 0.3
USP39-201ENST00000323701 C4orf47A7E2U8 309 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 GMFGO60234 142 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 TBXA2RP21731 343 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 DCAF7P61962 342 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 ALG10BQ5I7T1 473 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 GTF2IRD2BQ6EKJ0 949 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 GTF2IRD2Q86UP8 949 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 CMIPQ8IY22 773 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 GGHQ92820 318 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 CMKLR1Q99788 373 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 ZNF426Q9BUY5 554 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 LHPPQ9H008 270 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 TOR4AQ9NXH8 423 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 PSORS1C1Q9UIG5 152 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 TPRKBQ9Y3C4 175 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 LOXL2Q9Y4K0 774 aa16.89■□□□□ 0.29
USP39-201ENST00000323701 OR6C76A6NM76 312 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 CHP2O43745 196 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 ENTPD6O75354 484 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 INMTO95050 263 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 WISP1O95388 367 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 GSTM3P21266 225 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 MST1P26927 711 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 IFNGR2P38484 337 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 RASSF6Q6ZTQ3 369 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 MARCH3Q86UD3 253 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 TCEANCQ8N8B7 351 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 TOR1AIP2Q8NFQ8 470 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 NAA50Q9GZZ1 169 aaKnown RBP16.88■□□□□ 0.29
USP39-201ENST00000323701 OCEL1Q9H607 264 aa16.88■□□□□ 0.29
USP39-201ENST00000323701 ZBTB20Q9HC78 741 aaPredicted RBP16.88■□□□□ 0.29
USP39-201ENST00000323701 PARD6AQ9NPB6 346 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms