RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 TMEM246Q9BRR3 403 aa16.16■□□□□ 0.18
COL9A1-201ENST00000320755 HDHD2Q9H0R4 259 aa16.16■□□□□ 0.18
COL9A1-201ENST00000320755 PIGUQ9H490 435 aa16.16■□□□□ 0.18
COL9A1-201ENST00000320755 PPP1R3EQ9H7J1 279 aa16.16■□□□□ 0.18
COL9A1-201ENST00000320755 KLHL1Q9NR64 748 aa16.16■□□□□ 0.18
COL9A1-201ENST00000320755 BABAM2Q9NXR7 383 aa16.16■□□□□ 0.18
COL9A1-201ENST00000320755 CLDND1Q9NY35 253 aa16.16■□□□□ 0.18
COL9A1-201ENST00000320755 ALPK2Q86TB3 2170 aa16.16■□□□□ 0.18
COL9A1-201ENST00000320755 TDRD6O60522 2096 aaKnown RBP16.16■□□□□ 0.18
COL9A1-201ENST00000320755 J3QLW9 94 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 RNF13O43567 381 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 AGR2O95994 175 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 EGFP01133 1207 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 IGHA1P01876 353 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 ZNF19P17023 458 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 NDUFS1P28331 727 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 LSSP48449 732 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 PPP1CAP62136 330 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 DEFB110Q30KQ9 67 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 EIPR1Q53HC9 387 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 NIPAL3Q6P499 406 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 MEPCEQ7L2J0 689 aaKnown RBP16.15■□□□□ 0.18
COL9A1-201ENST00000320755 SLC37A3Q8NCC5 494 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 OR51L1Q8NGJ5 315 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 DNAJA4Q8WW22 397 aaPredicted RBP16.15■□□□□ 0.18
COL9A1-201ENST00000320755 PTP4A1Q93096 173 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 MYO15AQ9UKN7 3530 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 ELK1P19419 428 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 HCCSP53701 268 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 TATDN3Q17R31 274 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 USP53Q70EK8 1073 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 CDK20Q8IZL9 346 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 RDH10Q8IZV5 341 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 OR52N1Q8NH53 320 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 MED17Q9NVC6 651 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 EXTL2Q9UBQ6 330 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 C19orf53Q9UNZ5 99 aaPredicted RBP16.15■□□□□ 0.18
COL9A1-201ENST00000320755 URADA6NGE7 173 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 PRR23D1E9PI22 279 aaPredicted RBP16.15■□□□□ 0.18
COL9A1-201ENST00000320755 SGK494L7N484 410 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 PRR23D2P0DMB1 279 aaPredicted RBP16.15■□□□□ 0.18
COL9A1-201ENST00000320755 DDOSTP39656 456 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 ARFIP1P53367 373 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 VSX2P58304 361 aaPredicted RBP16.15■□□□□ 0.18
COL9A1-201ENST00000320755 NFATC4Q14934 902 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 PRPF38BQ5VTL8 546 aaKnown RBP16.15■□□□□ 0.18
COL9A1-201ENST00000320755 ABHD13Q7L211 337 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 GALNT6Q8NCL4 622 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 FLVCR1-AS1Q8TAF5 88 aa16.15■□□□□ 0.18
COL9A1-201ENST00000320755 A0A0G2JMP0 313 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 A0A0X1KG70 313 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 FAM47E-STBD1D6RA91 191 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 RFPL3O75679 317 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 CDC123O75794 336 aaPredicted RBP16.14■□□□□ 0.17
COL9A1-201ENST00000320755 DBIP07108 87 aaKnown RBP16.14■□□□□ 0.17
COL9A1-201ENST00000320755 NID1P14543 1247 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 OR10A3P58181 314 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 E2F1Q01094 437 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 FOXK2Q01167 660 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 TMEM44Q2T9K0 475 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 MZT2AQ6P582 158 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 ZNF438Q7Z4V0 828 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 SAMD14Q8IZD0 417 aaPredicted RBP16.14■□□□□ 0.17
COL9A1-201ENST00000320755 CAMKVQ8NCB2 501 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 OR4M2Q8NGB6 313 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 NT5CQ8TCD5 201 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 CNOT9Q92600 299 aaKnown RBP16.14■□□□□ 0.17
COL9A1-201ENST00000320755 ZFYVE21Q9BQ24 234 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 ZNF350Q9GZX5 532 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 FAM86C2PA6NEL3 165 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 PPP1R3DO95685 299 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 TYRP1P17643 537 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 KIR2DS3Q14952 304 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 NNATQ16517 81 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 RNASE12Q5GAN4 147 aaKnown RBP16.14■□□□□ 0.17
COL9A1-201ENST00000320755 OR5W2Q8NH69 310 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 TM4SF19Q96DZ7 209 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 HRASLS2Q9NWW9 162 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 NCKAP1Q9Y2A7 1128 aa16.14■□□□□ 0.17
COL9A1-201ENST00000320755 CDHR4A6H8M9 788 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 OR2W5A6NFC9 320 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 EPOPA6NHQ4 379 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 OR6C70A6NIJ9 312 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 BHLHE40O14503 412 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 LYRM1O43325 122 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 HCRTR1O43613 425 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 PAHP00439 452 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 CTSBP07858 339 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 PRKAR1AP10644 381 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 BMP8BP34820 402 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 RPS5P46782 204 aaKnown RBP16.13■□□□□ 0.17
COL9A1-201ENST00000320755 BMP8AQ7Z5Y6 402 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 SCARF2Q96GP6 870 aaPredicted RBP16.13■□□□□ 0.17
COL9A1-201ENST00000320755 TEAD3Q99594 435 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 TCEAL2Q9H3H9 227 aaPredicted RBP16.13■□□□□ 0.17
COL9A1-201ENST00000320755 EVA1BQ9NVM1 165 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 MED31Q9Y3C7 131 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 OR12D2P58182 307 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 CRMP1Q14194 572 aa16.13■□□□□ 0.17
COL9A1-201ENST00000320755 DGAT2L6Q6ZPD8 337 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms