RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 PIP5K1CO60331 668 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 MT-ND2P03891 347 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 ZGLP1P0C6A0 271 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 ZNF883P0CG24 379 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 FPR3P25089 353 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 CD97P48960 835 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 GTF2IRD2BQ6EKJ0 949 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 ZNF613Q6PF04 617 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 PRSS48Q7RTY5 328 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 GTF2IRD2Q86UP8 949 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 SVOPQ8N4V2 548 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 MUL1Q969V5 352 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 EFHD2Q96C19 240 aaPredicted RBP13.14□□□□□ -0.31
C9orf3-202ENST00000297979 LCORQ96JN0 433 aaPredicted RBP13.14□□□□□ -0.31
C9orf3-202ENST00000297979 LMF1Q96S06 567 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 LHPPQ9H008 270 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 NXF5Q9H1B4 397 aaKnown RBP13.14□□□□□ -0.31
C9orf3-202ENST00000297979 TMEM27Q9HBJ8 222 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 COPS7AQ9UBW8 275 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 KHNYNO15037 678 aaKnown RBP13.14□□□□□ -0.31
C9orf3-202ENST00000297979 SEC14L2O76054 403 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 LYPD3O95274 346 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 S100A1P23297 94 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 CSTF2P33240 577 aaKnown RBP eCLIP13.14□□□□□ -0.311e-6■■■□□ 15.5
C9orf3-202ENST00000297979 GRK6P43250 576 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 DCAF7P61962 342 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 DCDP81605 110 aaKnown RBP13.14□□□□□ -0.31
C9orf3-202ENST00000297979 EMX1Q04741 257 aaPredicted RBP13.14□□□□□ -0.31
C9orf3-202ENST00000297979 TRA2AQ13595 282 aaKnown RBP eCLIP13.14□□□□□ -0.311e-7■■■■■ 33.7
C9orf3-202ENST00000297979 SHISA6Q6ZSJ9 500 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 RASSF6Q6ZTQ3 369 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 KIF18BQ86Y91 864 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 TEX19Q8NA77 164 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 OR4C3Q8NH37 302 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 TEX47Q8TBZ9 253 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 ADIPOR1Q96A54 375 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 LOXL4Q96JB6 756 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 GAL3ST4Q96RP7 486 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 COPS4Q9BT78 406 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 CLN6Q9NWW5 311 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 OCIAD1Q9NX40 245 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 PTTG2Q9NZH5 202 aa13.14□□□□□ -0.31
C9orf3-202ENST00000297979 SH3D21A4FU49 640 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 SERINC4A6NH21 518 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 CLCA1A8K7I4 914 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 ZNF701M0R085 212 aaPredicted RBP13.13□□□□□ -0.31
C9orf3-202ENST00000297979 PRKNO60260 465 aaPredicted RBP13.13□□□□□ -0.31
C9orf3-202ENST00000297979 MASP1P48740 699 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 NUDT6P53370 316 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 SNRPGP62308 76 aaKnown RBP13.13□□□□□ -0.31
C9orf3-202ENST00000297979 B3GNT6Q6ZMB0 384 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 LANCL3Q6ZV70 420 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 ZNF550Q7Z398 422 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 IQCF1Q8N6M8 205 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 OR1N1Q8NGS0 311 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 TRUB1Q8WWH5 349 aaKnown RBP13.13□□□□□ -0.31
C9orf3-202ENST00000297979 OIT3Q8WWZ8 545 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 MYDGFQ969H8 173 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 SIGLEC11Q96RL6 698 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 HOXD1Q9GZZ0 328 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 DSN1Q9H410 356 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 EGLN3Q9H6Z9 239 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 APMAPQ9HDC9 416 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 MRTO4Q9UKD2 239 aaKnown RBP13.13□□□□□ -0.31
C9orf3-202ENST00000297979 C2orf92A0A1B0GVN3 265 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 EFCAB7A8K855 629 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 H0YC42 278 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 TNFRSF10AO00220 468 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 KLF4O43474 513 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 STAT5AP42229 794 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 ACAA2P42765 397 aaKnown RBP13.13□□□□□ -0.31
C9orf3-202ENST00000297979 GPR4P46093 362 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 GIPRP48546 466 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 SMSP52788 366 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 GABREP78334 506 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 CDK5Q00535 292 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 GINS1Q14691 196 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 EBPQ15125 230 aaKnown RBP13.13□□□□□ -0.31
C9orf3-202ENST00000297979 ZNF385CQ66K41 422 aaPredicted RBP13.13□□□□□ -0.31
C9orf3-202ENST00000297979 WDR88Q6ZMY6 472 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 C9orf40Q8IXQ3 194 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 RNF113BQ8IZP6 322 aaKnown RBP13.13□□□□□ -0.31
C9orf3-202ENST00000297979 ZNF420Q8TAQ5 688 aaPredicted RBP13.13□□□□□ -0.31
C9orf3-202ENST00000297979 ISOC1Q96CN7 298 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 IL4I1Q96RQ9 567 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 PLA2G12AQ9BZM1 189 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 SLC25A19Q9HC21 320 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 AMBNQ9NP70 447 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 EDARQ9UNE0 448 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 PCDHGA5Q9Y5G8 931 aa13.13□□□□□ -0.31
C9orf3-202ENST00000297979 A0A0B4J2E0 115 aa13.12□□□□□ -0.31
C9orf3-202ENST00000297979 A0A1B0GX12 115 aa13.12□□□□□ -0.31
C9orf3-202ENST00000297979 LDOC1O95751 146 aaPredicted RBP13.12□□□□□ -0.31
C9orf3-202ENST00000297979 CSTAP01040 98 aa13.12□□□□□ -0.31
C9orf3-202ENST00000297979 FGF5P12034 268 aa13.12□□□□□ -0.31
C9orf3-202ENST00000297979 DCKP27707 260 aa13.12□□□□□ -0.31
C9orf3-202ENST00000297979 MVKQ03426 396 aa13.12□□□□□ -0.31
C9orf3-202ENST00000297979 FAPQ12884 760 aa13.12□□□□□ -0.31
C9orf3-202ENST00000297979 GPR107Q5VW38 600 aa13.12□□□□□ -0.31
C9orf3-202ENST00000297979 HLA-DQA1Q5Y7H0 255 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms