RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 HS3ST1O14792 307 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 CLOCKO15516 846 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 CFLARO15519 480 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 OIP5O43482 229 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 C6orf47O95873 294 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 LAMP1P11279 417 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 PSMB1P20618 241 aaKnown RBP11.38□□□□□ -0.59
CD44-203ENST00000278386 SLC7A1P30825 629 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 CCT3P49368 545 aaKnown RBP11.38□□□□□ -0.59
CD44-203ENST00000278386 SUMO3P55854 103 aaPredicted RBP11.38□□□□□ -0.59
CD44-203ENST00000278386 ATP5J2P56134 94 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 PPP2R2BQ00005 443 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 RNPS1Q15287 305 aaKnown RBP11.38□□□□□ -0.59
CD44-203ENST00000278386 TSC22D1Q15714 1073 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 NDUFAF6Q330K2 333 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 ARL13AQ5H913 290 aaPredicted RBP11.38□□□□□ -0.59
CD44-203ENST00000278386 EXOSC6Q5RKV6 272 aaKnown RBP11.38□□□□□ -0.59
CD44-203ENST00000278386 FCRLAQ7L513 359 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 ZNF619Q8N2I2 560 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 RIBC1Q8N443 379 aaPredicted RBP11.38□□□□□ -0.59
CD44-203ENST00000278386 EIF1ADQ8N9N8 165 aaKnown RBP11.38□□□□□ -0.59
CD44-203ENST00000278386 STEAP2Q8NFT2 490 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 OR5AK3PQ8NH89 298 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 OR2W6PQ8NHA6 318 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 ZFP90Q8TF47 636 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 OR5P2Q8WZ92 322 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 AKAP1Q92667 903 aaKnown RBP eCLIP11.38□□□□□ -0.59
CD44-203ENST00000278386 S100PBPQ96BU1 408 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 HOXD1Q9GZZ0 328 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 CXorf36Q9H7Y0 433 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 KLHL13Q9P2N7 655 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 SLC17A7Q9P2U7 560 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 GPC6Q9Y625 555 aaPredicted RBP11.38□□□□□ -0.59
CD44-203ENST00000278386 ZNF195O14628 629 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 SPAG7O75391 227 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 SLU7O95391 586 aaKnown RBP11.37□□□□□ -0.59
CD44-203ENST00000278386 CNOT4O95628 575 aaKnown RBP11.37□□□□□ -0.59
CD44-203ENST00000278386 UBL4AP11441 157 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 RPS4XP62701 263 aaKnown RBP11.37□□□□□ -0.59
CD44-203ENST00000278386 IFFO1Q0D2I5 559 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 SELENBP1Q13228 472 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 CAPRIN1Q14444 709 aaKnown RBP11.37□□□□□ -0.59
CD44-203ENST00000278386 LSM12Q3MHD2 195 aaKnown RBP11.37□□□□□ -0.59
CD44-203ENST00000278386 TMEM176BQ3YBM2 270 aaPredicted RBP11.37□□□□□ -0.59
CD44-203ENST00000278386 XKR7Q5GH72 579 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.37□□□□□ -0.59
CD44-203ENST00000278386 CBLN3Q6UW01 205 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 TFAP2EQ6VUC0 442 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 NUFIP2Q7Z417 695 aaKnown RBP11.37□□□□□ -0.59
CD44-203ENST00000278386 TUSC5Q8IXB3 177 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 KRTCAP2Q8N6L1 136 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 BANPQ8N9N5 519 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 TOR1AIP2Q8NFQ8 470 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 SFXN5Q8TD22 340 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 MOAP1Q96BY2 351 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 PRPF18Q99633 342 aaKnown RBP11.37□□□□□ -0.59
CD44-203ENST00000278386 OR10A4Q9H209 315 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 COQ10BQ9H8M1 238 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 RNF115Q9Y4L5 304 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 TLN2Q9Y4G6 2542 aa11.37□□□□□ -0.59
CD44-203ENST00000278386 IGHV3-15A0A0B4J1V0 119 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 LYPLA1O75608 230 aaPredicted RBP11.36□□□□□ -0.59
CD44-203ENST00000278386 CYP7B1O75881 506 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 NTN1O95631 604 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 FGF4P08620 206 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 PRKCAP17252 672 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 ADH6P28332 368 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 ATP12AP54707 1039 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 CBFBQ13951 182 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 TOMM34Q15785 309 aaPredicted RBP11.36□□□□□ -0.59
CD44-203ENST00000278386 UGT3A2Q3SY77 523 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 IL23RQ5VWK5 629 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 C3orf33Q6P1S2 294 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 NATD1Q8N6N6 113 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 ZNF611Q8N823 705 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 OR5D16Q8NGK9 328 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 RAB3IL1Q8TBN0 382 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 KISS1RQ969F8 398 aaPredicted RBP11.36□□□□□ -0.59
CD44-203ENST00000278386 FBXW5Q969U6 566 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 TUBGCP3Q96CW5 907 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 TRIM44Q96DX7 344 aaPredicted RBP11.36□□□□□ -0.59
CD44-203ENST00000278386 C3orf30Q96M34 536 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 OR7D2Q96RA2 312 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 ANKZF1Q9H8Y5 726 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 NGBQ9NPG2 151 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 GPATCH2Q9NW75 528 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 ICAM5Q9UMF0 924 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 LAMP3Q9UQV4 416 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 DTNAQ9Y4J8 743 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 ACTL7BQ9Y614 415 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 KCNE3Q9Y6H6 103 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 CR1P17927 2039 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 CHD3Q12873 2000 aaKnown RBP11.36□□□□□ -0.59
CD44-203ENST00000278386 HIVEP2P31629 2446 aa11.36□□□□□ -0.59
CD44-203ENST00000278386 A0A1W2PNR3 127 aa11.35□□□□□ -0.59
CD44-203ENST00000278386 INAFM1C9JVW0 142 aa11.35□□□□□ -0.59
CD44-203ENST00000278386 ZNF264O43296 627 aa11.35□□□□□ -0.59
CD44-203ENST00000278386 TMCC2O75069 709 aa11.35□□□□□ -0.59
CD44-203ENST00000278386 GCM2O75603 506 aaPredicted RBP11.35□□□□□ -0.59
CD44-203ENST00000278386 PRKD3O94806 890 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms