RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SERPINA5P05154 406 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 ALDOCP09972 364 aaKnown RBP17.97■□□□□ 0.47
UPF1-201ENST00000262803 SAMD8Q96LT4 415 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 CCNL2Q96S94 520 aaPredicted RBP17.97■□□□□ 0.47
UPF1-201ENST00000262803 TSPAN10Q9H1Z9 355 aaPredicted RBP17.97■□□□□ 0.47
UPF1-201ENST00000262803 LAMB4A4D0S4 1761 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 DOT1LQ8TEK3 1739 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 MEN1O00255 615 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 AMY2AP04746 511 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 ARSAP15289 507 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 LTB4RQ15722 352 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 DEFB133Q30KQ1 61 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 AKR1C8PQ5T2L2 129 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 DCAF12Q5T6F0 453 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 OR11L1Q8NGX0 322 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 TP53TG5Q9Y2B4 290 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 CD79AP11912 226 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 RAB38P57729 211 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 PAQR9Q6ZVX9 377 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 HSD11B1LQ7Z5J1 315 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 ZNF695Q8IW36 515 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 CCDC28AQ8IWP9 274 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 FGF13Q92913 245 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 CNIH4Q9P003 139 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 A0A087WUU8 490 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 RNF212BA8MTL3 300 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 SLC16A9Q7RTY1 509 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 MICU1Q9BPX6 476 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 UGT2B7P16662 529 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 CCR7P32248 378 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 SLC43A2Q8N370 569 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 CHDHQ8NE62 594 aaPredicted RBP17.96■□□□□ 0.47
UPF1-201ENST00000262803 TBC1D15Q8TC07 691 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 GLYATL2Q8WU03 294 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 ACOT11Q8WXI4 607 aaPredicted RBP17.96■□□□□ 0.47
UPF1-201ENST00000262803 ALG8Q9BVK2 526 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 MRPL15Q9P015 296 aaKnown RBP17.96■□□□□ 0.47
UPF1-201ENST00000262803 WIF1Q9Y5W5 379 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 PRSS21Q9Y6M0 314 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 BCAT2O15382 392 aaPredicted RBP17.96■□□□□ 0.47
UPF1-201ENST00000262803 SLC43A1O75387 559 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 CA5AP35218 305 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 ALDH3B2P48448 385 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 PLAG1Q6DJT9 500 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 MUCL1Q96DR8 90 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 FER1L6-AS2Q96M78 137 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 REV1Q9UBZ9 1251 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 ITGB2P05107 769 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 UQCRC1P31930 480 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 NKX2-5P52952 324 aaPredicted RBP17.96■□□□□ 0.47
UPF1-201ENST00000262803 GGTA1PQ4G0N0 100 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 HHIPQ96QV1 700 aa17.96■□□□□ 0.47
UPF1-201ENST00000262803 NUP98P52948 1817 aa17.96■□□□□ 0.46
UPF1-201ENST00000262803 C12orf71A8MTZ7 269 aa17.96■□□□□ 0.46
UPF1-201ENST00000262803 SC5DO75845 299 aa17.96■□□□□ 0.46
UPF1-201ENST00000262803 GPR75O95800 540 aa17.96■□□□□ 0.46
UPF1-201ENST00000262803 MAP4K2Q12851 820 aa17.96■□□□□ 0.46
UPF1-201ENST00000262803 CPOQ8IVL8 374 aa17.96■□□□□ 0.46
UPF1-201ENST00000262803 CEPT1Q9Y6K0 416 aa17.96■□□□□ 0.46
UPF1-201ENST00000262803 GABRR3A8MPY1 467 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 ATXN1LP0C7T5 689 aaKnown RBP17.95■□□□□ 0.46
UPF1-201ENST00000262803 ADRA1AP35348 466 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 DLSTP36957 453 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 LSSP48449 732 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 DEFB110Q30KQ9 67 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 RNF113BQ8IZP6 322 aaKnown RBP17.95■□□□□ 0.46
UPF1-201ENST00000262803 EGLN2Q96KS0 407 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 PRRT1Q99946 306 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 SERPINE2P07093 398 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 CAMLGP49069 296 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 TECPR1Q7Z6L1 1165 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 IGFN1Q86VF2 1251 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 MFSD6LQ8IWD5 586 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 MKXQ8IYA7 352 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 ITFG2Q969R8 447 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 CNOT2Q9NZN8 540 aaKnown RBP17.95■□□□□ 0.46
UPF1-201ENST00000262803 MYOTQ9UBF9 498 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 CNOT4O95628 575 aaKnown RBP17.95■□□□□ 0.46
UPF1-201ENST00000262803 PLATP00750 562 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 ACPPP15309 386 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 PBX2P40425 430 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 MAGEA3P43357 314 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 OR56B2PQ8NGI1 322 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 GTF2H4Q92759 462 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 ITPKCQ96DU7 683 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 ARL6Q9H0F7 186 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 A0A0A6YYC8 382 aaPredicted RBP17.95■□□□□ 0.46
UPF1-201ENST00000262803 I3L1I5 382 aaPredicted RBP17.95■□□□□ 0.46
UPF1-201ENST00000262803 CRTAPO75718 401 aaPredicted RBP17.95■□□□□ 0.46
UPF1-201ENST00000262803 FAM26DQ5JW98 314 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 METTL11BQ5VVY1 283 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 SFRP4Q6FHJ7 346 aaPredicted RBP17.95■□□□□ 0.46
UPF1-201ENST00000262803 ZFAND1Q8TCF1 268 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 UPRTQ96BW1 309 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 EIF5A2Q9GZV4 153 aaKnown RBP17.95■□□□□ 0.46
UPF1-201ENST00000262803 OR51E2Q9H255 320 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 PRMT8Q9NR22 394 aaPredicted RBP17.95■□□□□ 0.46
UPF1-201ENST00000262803 POLHQ9Y253 713 aa17.95■□□□□ 0.46
UPF1-201ENST00000262803 ABOP16442 354 aa17.94■□□□□ 0.46
UPF1-201ENST00000262803 GPR149Q86SP6 731 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms