RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 RAB28P51157 221 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 DGKEP52429 567 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 IFITM2Q01629 132 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 HSF2Q03933 536 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 RIN1Q13671 783 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 SYPL1Q16563 259 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF628Q5EBL2 1059 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 VN1R5Q7Z5H4 357 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ADIPOR2Q86V24 386 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 FAM129CQ86XR2 697 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 TMC8Q8IU68 726 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 TOMM5Q8N4H5 51 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF655Q8N720 491 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 GPR32P1Q8NGA4 272 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF671Q8TAW3 534 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 INTS12Q96CB8 462 aaKnown RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 HS6ST2Q96MM7 605 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 AMDHD1Q96NU7 426 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 OR2M2Q96R28 347 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 MKRN2Q9H000 416 aaKnown RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 MTHFD2LQ9H903 347 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 TMEM27Q9HBJ8 222 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 EMC7Q9NPA0 242 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 B3GNT2Q9NY97 397 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 NLKQ9UBE8 527 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 MALT1Q9UDY8 824 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 LAMP5Q9UJQ1 280 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 A4GNTQ9UNA3 340 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 COLEC10Q9Y6Z7 277 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 MYOFQ9NZM1 2061 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 TBC1D3KA0A087X1G2 549 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 TBC1D3BA6NDS4 549 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 TBC1D3FA6NER0 549 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 PRAMEF25A6NGN4 478 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 CPSF4LA6NMK7 179 aaKnown RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 HEPACAM2A8MVW5 462 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 LRRN3E7EW58 273 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 H7BY64 318 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 RTCAO00442 366 aaKnown RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 SEC14L5O43304 696 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 SSNA1O43805 119 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 HPGDSO60760 199 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 PCDH8O95206 1070 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 HLA-DQB1P01920 261 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 HBQ1P09105 142 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 CHRNB1P11230 501 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ADRB3P13945 408 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 GJA1P17302 382 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 GRK6P43250 576 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 GCGRP47871 477 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 RFX2P48378 723 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 PITPNBP48739 271 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 EVX1P49640 407 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 MAN2A2P49641 1150 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 SGCGQ13326 291 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 STK11Q15831 433 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ZSWIM7Q19AV6 140 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 C2orf27AQ580R0 203 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 YIF1BQ5BJH7 314 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 CLEC12AQ5QGZ9 265 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 SNAP47Q5SQN1 464 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 SLC22A10Q63ZE4 541 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 TBC1D3GQ6DHY5 549 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 MBOAT2Q6ZWT7 520 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 KRT74Q7RTS7 529 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ZER1Q7Z7L7 766 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 RNF113BQ8IZP6 322 aaKnown RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 NUP43Q8NFH3 380 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 OR10H4Q8NGA5 316 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 OR5AR1Q8NGP9 310 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 OR4C6Q8NH72 309 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 FANK1Q8TC84 345 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 GANCQ8TET4 914 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ZNF431Q8TF32 576 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 TM9SF4Q92544 642 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 C12orf66Q96MD2 445 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 PRAP1Q96NZ9 151 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 IL17FQ96PD4 163 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 MS4A4EQ96PG1 132 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ERMAPQ96PL5 475 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 GFM1Q96RP9 751 aaKnown RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 C17orf62Q9BQA9 187 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 WACQ9BTA9 647 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 MRI1Q9BV20 369 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 BARHL1Q9BZE3 327 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 SMG9Q9H0W8 520 aaKnown RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ZBP1Q9H171 429 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 ARRDC1-AS1Q9H2J1 176 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 LRRN3Q9H3W5 708 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 WDR26Q9H7D7 661 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 GPN1Q9HCN4 374 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 RPS6KB2Q9UBS0 482 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 PLEKHB1Q9UF11 243 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 TESQ9UGI8 421 aaKnown RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 MOSPD1Q9UJG1 213 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 CBLCQ9ULV8 474 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 EXO1Q9UQ84 846 aaKnown RBP3.72□□□□□ -1.81
SCN1A-214ENST00000637038 SLC27A6Q9Y2P4 619 aa3.72□□□□□ -1.81
SCN1A-214ENST00000637038 CLCA3PQ9Y6N3 262 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms