RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 TIMP2P16035 220 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 GJA1P17302 382 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 NDUFV2P19404 249 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 PTNP21246 168 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 VEGFBP49765 207 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 NCBP2P52298 156 aaKnown RBP eCLIP13.14□□□□□ -0.31
LDB3-209ENST00000623056 TRAM1Q15629 374 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 DECR1Q16698 335 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 ASTLQ6HA08 431 aaPredicted RBP13.14□□□□□ -0.31
LDB3-209ENST00000623056 LCTLQ6UWM7 567 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 HTR3DQ70Z44 454 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 GET4Q7L5D6 327 aaPredicted RBP13.14□□□□□ -0.31
LDB3-209ENST00000623056 ADCK2Q7Z695 626 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 NUDT13Q86X67 352 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 AMER3Q8N944 861 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 COQ8AQ8NI60 647 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 SMIM4Q8WVI0 70 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 NR4A3Q92570 626 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 PIGKQ92643 395 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 ZG16BQ96DA0 208 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 NDC1Q9BTX1 674 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 OR10A4Q9H209 315 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 UBQLN3Q9H347 655 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 ANKRD19PQ9H560 264 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 HMX1Q9NP08 348 aaPredicted RBP13.14□□□□□ -0.31
LDB3-209ENST00000623056 IFT46Q9NQC8 304 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 MGAT4CQ9UBM8 478 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 ZMIZ1Q9ULJ6 1067 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 BAIAP2Q9UQB8 552 aa13.14□□□□□ -0.31
LDB3-209ENST00000623056 A0A0G2JN53 185 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 CDC42EP2O14613 210 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 GRM6O15303 877 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 PRAF2O60831 178 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 HMGN2P05204 90 aaKnown RBP13.13□□□□□ -0.31
LDB3-209ENST00000623056 SERPIND1P05546 499 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 CKMP06732 381 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 ACVR1BP36896 505 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 KIAA1024LP59773 190 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 SIM1P81133 766 aaPredicted RBP13.13□□□□□ -0.31
LDB3-209ENST00000623056 ACSM3Q53FZ2 586 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 TMEM255AQ5JRV8 349 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 SFRP5Q5T4F7 317 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 METTL11BQ5VVY1 283 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 RPTNQ6XPR3 784 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 SYT9Q86SS6 491 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 ASPGQ86U10 573 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 TRAPPC5Q8IUR0 188 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 STPG2Q8N412 459 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 FAM98AQ8NCA5 519 aaKnown RBP13.13□□□□□ -0.31
LDB3-209ENST00000623056 OR13C5Q8NGS8 318 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 ZNF296Q8WUU4 475 aaPredicted RBP13.13□□□□□ -0.31
LDB3-209ENST00000623056 TMEM255BQ8WV15 326 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 AUTS2Q8WXX7 1259 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 SIPA1Q96FS4 1042 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 ZNF764Q96H86 408 aaPredicted RBP13.13□□□□□ -0.31
LDB3-209ENST00000623056 NRTNQ99748 197 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 ORAI3Q9BRQ5 295 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 HCAR1Q9BXC0 346 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 ZCCHC2Q9C0B9 1178 aaKnown RBP13.13□□□□□ -0.31
LDB3-209ENST00000623056 IL21Q9HBE4 155 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 POLMQ9NP87 494 aaPredicted RBP13.13□□□□□ -0.31
LDB3-209ENST00000623056 CA10Q9NS85 328 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 HRH3Q9Y5N1 445 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 COL4A3Q01955 1670 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 CXorf51AA0A1B0GTR3 108 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 FEZF1A0PJY2 475 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 PCP4L1A6NKN8 68 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 KIAA0355O15063 1070 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 LILRB5O75023 590 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 LEFTY1O75610 366 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 REM1O75628 298 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 THY1P04216 161 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 FCER2P06734 321 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 SAGP10523 405 aaPredicted RBP13.13□□□□□ -0.31
LDB3-209ENST00000623056 CCR9P51686 369 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 C6orf132Q5T0Z8 1188 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 LRFN4Q6PJG9 635 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 FAM71CQ8NEG0 241 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 PXYLP1Q8TE99 480 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 KISS1RQ969F8 398 aaPredicted RBP13.13□□□□□ -0.31
LDB3-209ENST00000623056 RGMAQ96B86 450 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 C16orf58Q96GQ5 468 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 PGLYRP3Q96LB9 341 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 SEC22CQ9BRL7 303 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 NANSQ9NR45 359 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 ABRACLQ9P1F3 81 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 PFDN2Q9UHV9 154 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 RCE1Q9Y256 329 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 MYOFQ9NZM1 2061 aa13.13□□□□□ -0.31
LDB3-209ENST00000623056 A0A1B0GUH1 482 aa13.12□□□□□ -0.31
LDB3-209ENST00000623056 TCRBV16S1A1N1A0A5B0 115 aa13.12□□□□□ -0.31
LDB3-209ENST00000623056 OR6C65A6NJZ3 312 aa13.12□□□□□ -0.31
LDB3-209ENST00000623056 WASH3PC4AMC7 463 aa13.12□□□□□ -0.31
LDB3-209ENST00000623056 CTDSPLO15194 276 aa13.12□□□□□ -0.31
LDB3-209ENST00000623056 ZGLP1P0C6A0 271 aa13.12□□□□□ -0.31
LDB3-209ENST00000623056 EPXP11678 715 aa13.12□□□□□ -0.31
LDB3-209ENST00000623056 PSMB1P20618 241 aaKnown RBP13.12□□□□□ -0.31
LDB3-209ENST00000623056 NFYAP23511 347 aaPredicted RBP13.12□□□□□ -0.31
LDB3-209ENST00000623056 ATP5A1P25705 553 aaKnown RBP13.12□□□□□ -0.31
LDB3-209ENST00000623056 RAD52P43351 418 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms