RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 IFNGR2P38484 337 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 CYB561P49447 251 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 HLCSP50747 726 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 CDH12P55289 794 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 CDC20Q12834 499 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 TRAM2Q15035 370 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 ENTPD8Q5MY95 495 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 BROXQ5VW32 411 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 LPCAT4Q643R3 524 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 TMEM81Q6P7N7 255 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 ZNF613Q6PF04 617 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 RRM2BQ7LG56 351 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 STK32CQ86UX6 486 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 RBM45Q8IUH3 476 aaKnown RBP13.97□□□□□ -0.17
TRIM28-209ENST00000597423 TMCO5AQ8N6Q1 288 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 AMER2Q8N7J2 671 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 OR4D11Q8NGI4 311 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 PSMF1Q92530 271 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 NODALQ96S42 347 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 RSPO3Q9BXY4 272 aaPredicted RBP13.97□□□□□ -0.17
TRIM28-209ENST00000597423 ANKRD19PQ9H560 264 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 NTN4Q9HB63 628 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 FLRT3Q9NZU0 649 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 ACAD8Q9UKU7 415 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 OAZ3Q9UMX2 235 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 CARD8Q9Y2G2 431 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 A0A1W2PRQ8 180 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 SAC3D1A6NKF1 404 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 FRS3O43559 492 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 HCRTR2O43614 444 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 SCO2O43819 266 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 ZNF354AO60765 605 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-209ENST00000597423 SNX4O95219 450 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 P04436 131 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 GKN3PP0CG01 181 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 PGCP20142 388 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 ITPKBP27987 946 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 SUMO3P55854 103 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-209ENST00000597423 OC90Q02509 493 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-209ENST00000597423 PIN1Q13526 163 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-209ENST00000597423 CBFBQ13951 182 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 DGCR6Q14129 220 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 OR1Q1Q15612 314 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 NPTX1Q15818 432 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 LRRC36Q1X8D7 754 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 DCST1Q5T197 706 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 FNDC7Q5VTL7 733 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 ISLR2Q6UXK2 745 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 APOOLQ6UXV4 268 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 TSEN54Q7Z6J9 526 aaKnown RBP13.96□□□□□ -0.17
TRIM28-209ENST00000597423 COMTD1Q86VU5 262 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 LACC1Q8IV20 430 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 OFCC1Q8IZS5 231 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 LSMEM1Q8N8F7 131 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 GATSQ8NAP1 163 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 FAM71CQ8NEG0 241 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 OR10G3Q8NGC4 313 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 B4GALNT2Q8NHY0 566 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 GRHL3Q8TE85 626 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 DUSP19Q8WTR2 217 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 DNAJA4Q8WW22 397 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-209ENST00000597423 SLC38A4Q969I6 547 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 DTNBP1Q96EV8 351 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 ALPK1Q96QP1 1244 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 CIB1Q99828 191 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 UTP23Q9BRU9 249 aaKnown RBP13.96□□□□□ -0.17
TRIM28-209ENST00000597423 CPNE5Q9HCH3 593 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 TIMMDC1Q9NPL8 285 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 ACER3Q9NUN7 267 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 A4GNTQ9UNA3 340 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 ORC6Q9Y5N6 252 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 U3KQV3 271 aa13.96□□□□□ -0.17
TRIM28-209ENST00000597423 DMXL1Q9Y485 3027 aa13.96□□□□□ -0.18
TRIM28-209ENST00000597423 ANKRD33BA6NCL7 494 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 CPSF4LA6NMK7 179 aaKnown RBP13.95□□□□□ -0.18
TRIM28-209ENST00000597423 FAM47E-STBD1D6RA91 191 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 H0YJX3 145 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 J3KTA2 159 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 MASP2O00187 686 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 FAAHO00519 579 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 CCNB2O95067 398 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 ADRB1P08588 477 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 PEX2P28328 305 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 CASP3P42574 277 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 ACAA2P42765 397 aaKnown RBP13.95□□□□□ -0.18
TRIM28-209ENST00000597423 P2RX1P51575 399 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 ZNF136P52737 540 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 EPS8Q12929 822 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 SKP2Q13309 424 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 GANABQ14697 944 aaKnown RBP13.95□□□□□ -0.18
TRIM28-209ENST00000597423 CD226Q15762 336 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 B3GNTL1Q67FW5 361 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-209ENST00000597423 WBP2NLQ6ICG8 309 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 PPP4R4Q6NUP7 873 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 ULK3Q6PHR2 472 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 CCDC81Q6ZN84 652 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 LRRC69Q6ZNQ3 347 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 ZNF605Q86T29 641 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 PACS2Q86VP3 889 aa13.95□□□□□ -0.18
TRIM28-209ENST00000597423 CYP4Z2PQ8N1L4 340 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms