RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SDF2Q99470 211 aa13.62□□□□□ -0.23
TRIM28-205ENST00000595028 ZBTB18Q99592 522 aa13.62□□□□□ -0.23
TRIM28-205ENST00000595028 OR51I1Q9H343 314 aa13.62□□□□□ -0.23
TRIM28-205ENST00000595028 ACBD3Q9H3P7 528 aa13.62□□□□□ -0.23
TRIM28-205ENST00000595028 SLC24A3Q9HC58 644 aa13.62□□□□□ -0.23
TRIM28-205ENST00000595028 MED17Q9NVC6 651 aa13.62□□□□□ -0.23
TRIM28-205ENST00000595028 KCNN3Q9UGI6 736 aa13.62□□□□□ -0.23
TRIM28-205ENST00000595028 AP4B1Q9Y6B7 739 aa13.62□□□□□ -0.23
TRIM28-205ENST00000595028 HEATR5AQ86XA9 2040 aa13.62□□□□□ -0.23
TRIM28-205ENST00000595028 SLC22A20A6NK97 555 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 EEF1E1-BLOC1S5C9J1V9 151 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 H3BNH8 94 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 EEF1E1O43324 174 aaKnown RBP13.61□□□□□ -0.23
TRIM28-205ENST00000595028 OIP5O43482 229 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 TNFRSF21O75509 655 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 RCBTB2O95199 551 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 TGM6O95932 706 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 UQCRC1P31930 480 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 KHKP50053 298 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 RNF144AP50876 292 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-205ENST00000595028 AGFG1P52594 562 aaKnown RBP13.61□□□□□ -0.23
TRIM28-205ENST00000595028 CLDN20P56880 219 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 KLHL26Q53HC5 615 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 HEPHL1Q6MZM0 1159 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 TNFAIP8L2Q6P589 184 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-205ENST00000595028 GCNT2Q8N0V5 402 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 METTL25Q8N6Q8 603 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 ZNF614Q8N883 585 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 PHOSPHO1Q8TCT1 267 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 LRRC8CQ8TDW0 803 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 SMPDL3BQ92485 455 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 RNASE6Q93091 150 aaKnown RBP13.61□□□□□ -0.23
TRIM28-205ENST00000595028 INTS12Q96CB8 462 aaKnown RBP13.61□□□□□ -0.23
TRIM28-205ENST00000595028 LRRC46Q96FV0 321 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 OR52B2Q96RD2 323 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 KLHDC3Q9BQ90 382 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 SLC35A5Q9BS91 424 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 NMUR2Q9GZQ4 415 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 ZNF350Q9GZX5 532 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 VIPAS39Q9H9C1 493 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 EXD2Q9NVH0 621 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 JKAMPQ9P055 326 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 DTNAQ9Y4J8 743 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 USH1CQ9Y6N9 552 aa13.61□□□□□ -0.23
TRIM28-205ENST00000595028 HMGB1P1B2RPK0 211 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-205ENST00000595028 SYT5O00445 386 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 AGR2O95994 175 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 PSMA4P25789 261 aaKnown RBP13.6□□□□□ -0.23
TRIM28-205ENST00000595028 CHI3L1P36222 383 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-205ENST00000595028 PEX19P40855 299 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 CASP9P55211 416 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 SUMO3P55854 103 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-205ENST00000595028 RPS3AP61247 264 aaKnown RBP13.6□□□□□ -0.23
TRIM28-205ENST00000595028 LRRC74AQ0VAA2 488 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 FUT5Q11128 374 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 MYBPHQ13203 477 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 ARHGAP11BQ3KRB8 267 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 CBLN3Q6UW01 205 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 CHMP1BQ7LBR1 199 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 C16orf62Q7Z3J2 963 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 P4HA3Q7Z4N8 544 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 GGNQ86UU5 652 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 GOLGA6L1Q8N7Z2 621 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 FIG4Q92562 907 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 ZNF845Q96IR2 970 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-205ENST00000595028 RNF145Q96MT1 663 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 OR52E6Q96RD3 313 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 PANX1Q96RD7 426 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 NPAS1Q99742 590 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 INPP5KQ9BT40 448 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 PINK1Q9BXM7 581 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 MCCC2Q9HCC0 563 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 SDR39U1Q9NRG7 319 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-205ENST00000595028 ZIM2Q9NZV7 527 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 FOXD3Q9UJU5 478 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-205ENST00000595028 ICAM5Q9UMF0 924 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 ZNF175Q9Y473 711 aa13.6□□□□□ -0.23
TRIM28-205ENST00000595028 CENPVL1A0A0U1RR11 272 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 A0A1W2PNV4 684 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 UBDO15205 165 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 KIAA0513O60268 411 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 STX11O75558 287 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 SLC22A3O75751 556 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 LINGO3P0C6S8 592 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 OR12D1P0DN82 309 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 UBL4AP11441 157 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 CAPN3P20807 821 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 CDKN2CP42773 168 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 P2RX1P51575 399 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 FOXF1Q12946 379 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 ZNF141Q15928 474 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 GSTA3Q16772 222 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 NDUFAF6Q330K2 333 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 PDZK1Q5T2W1 519 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 ATAD3BQ5T9A4 648 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 OR2A2Q6IF42 318 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 EPGNQ6UW88 154 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 OLIG3Q7RTU3 272 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 TRIML2Q8N7C3 387 aa13.59□□□□□ -0.23
TRIM28-205ENST00000595028 POC1BQ8TC44 478 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms