RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PLSCR4Q9NRQ2 329 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 GPATCH2Q9NW75 528 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 CLEC4AQ9UMR7 237 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 A0A1W2PQD3 144 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 SIAH2O43255 324 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 OIP5O43482 229 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 IL11P20809 199 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 KCNJ5P48544 419 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 EMX2Q04743 252 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 CTU2Q2VPK5 515 aaKnown RBP18.35■□□□□ 0.53
SHMT1-209ENST00000582653 DCST2Q5T1A1 773 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 WDR75Q8IWA0 830 aaKnown RBP18.35■□□□□ 0.53
SHMT1-209ENST00000582653 CLEC4FQ8N1N0 589 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 OR56A1Q8NGH5 318 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 OR10D3Q8NH80 312 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 PHOSPHO1Q8TCT1 267 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 ACTRT2Q8TDY3 377 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 PIGTQ969N2 578 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 ZBTB8AQ96BR9 441 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 ADGRG7Q96K78 797 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 PIP5K1AQ99755 562 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 MED18Q9BUE0 208 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 DUSP26Q9BV47 211 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 BHLHE41Q9C0J9 482 aaPredicted RBP18.35■□□□□ 0.53
SHMT1-209ENST00000582653 PAQR5Q9NXK6 330 aaPredicted RBP18.35■□□□□ 0.53
SHMT1-209ENST00000582653 FAF1Q9UNN5 650 aaPredicted RBP18.35■□□□□ 0.53
SHMT1-209ENST00000582653 PROCRQ9UNN8 238 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 ACANP16112 2415 aa18.35■□□□□ 0.53
SHMT1-209ENST00000582653 A0A0J9YW62 118 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 TNFSF11O14788 317 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 CXCL13O43927 109 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 FCGR2AP12318 317 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 ATP6V1C1P21283 382 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 ABCE1P61221 599 aaKnown RBP18.34■□□□□ 0.53
SHMT1-209ENST00000582653 RAC1P63000 192 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 HBA1P69905 142 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 ZNF117Q03924 483 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 KLHL26Q53HC5 615 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 CBLN3Q6UW01 205 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 BIVMQ86UB2 503 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 KRTAP1-3Q8IUG1 177 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 MISPQ8IVT2 679 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 CLECL1Q8IZS7 167 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 NATD1Q8N6N6 113 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 OR5D16Q8NGK9 328 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 C18orf12Q96KH6 178 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 AKTIPQ9H8T0 292 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 CARD8Q9Y2G2 431 aa18.34■□□□□ 0.53
SHMT1-209ENST00000582653 C7orf72A4D263 438 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 ADAMDEC1O15204 470 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 ARHGEF9O43307 516 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 SERPINE1P05121 402 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 LINGO3P0C6S8 592 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 CCKARP32238 428 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 SOAT1P35610 550 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 CLDN8P56748 225 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 RPS26P62854 115 aaKnown RBP18.33■□□□□ 0.52
SHMT1-209ENST00000582653 MPP2Q14168 576 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 NDUFAF6Q330K2 333 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.33■□□□□ 0.52
SHMT1-209ENST00000582653 ANKRD34AQ69YU3 496 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 OR4F3Q6IEY1 312 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 C22orf34Q6ZV56 151 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 ZNF550Q7Z398 422 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 LRRC75A-AS1Q8N1F1 130 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 SFXN5Q8TD22 340 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 MARK4Q96L34 752 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 OR7D2Q96RA2 312 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 CENPHQ9H3R5 247 aa18.33■□□□□ 0.52
SHMT1-209ENST00000582653 NOP53Q9NZM5 478 aaKnown RBP18.33■□□□□ 0.52
SHMT1-209ENST00000582653 BIRC5O15392 142 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 EFNA2O43921 213 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 FPR1P21462 350 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 SHC1P29353 583 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 FOXF1Q12946 379 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 MAD2L1Q13257 205 aaPredicted RBP18.32■□□□□ 0.52
SHMT1-209ENST00000582653 ACKR1Q16570 336 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 EXOC3L2Q2M3D2 409 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 LILRA2Q8N149 483 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 OR2V1Q8NHB1 315 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 PIK3IP1Q96FE7 263 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 ZC3HAV1LQ96H79 300 aaKnown RBP18.32■□□□□ 0.52
SHMT1-209ENST00000582653 GMPPAQ96IJ6 420 aaPredicted RBP18.32■□□□□ 0.52
SHMT1-209ENST00000582653 HOXD1Q9GZZ0 328 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 SERHL2Q9H4I8 314 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 ASIC5Q9NY37 505 aa18.32■□□□□ 0.52
SHMT1-209ENST00000582653 SYNGR4O95473 234 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 NUDT14O95848 222 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 PLGP00747 810 aaPredicted RBP18.31■□□□□ 0.52
SHMT1-209ENST00000582653 KRT16P08779 473 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 DHRS4L1P0CG22 281 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 BGNP21810 368 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 SFTPDP35247 375 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 SLC1A6P48664 564 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 ATP12AP54707 1039 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 CASP9P55211 416 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 C21orf58P58505 322 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 TOMM34Q15785 309 aaPredicted RBP18.31■□□□□ 0.52
SHMT1-209ENST00000582653 CEP85LQ5SZL2 805 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 HBMQ6B0K9 141 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms