RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ANKRD60Q9BZ19 345 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 GABARAPL1Q9H0R8 117 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 EVA1AQ9H8M9 152 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 WDR54Q9H977 334 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 Q9N2J8 555 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 NDUFAF4Q9P032 175 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 PDP1Q9P0J1 537 aaPredicted RBP9.36□□□□□ -0.91
SS18-207ENST00000577636 PRODH2Q9UF12 536 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 NXT1Q9UKK6 140 aaKnown RBP9.36□□□□□ -0.91
SS18-207ENST00000577636 WDR45Q9Y484 360 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 TESMINQ9Y4I5 508 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 F8P00451 2351 aa9.36□□□□□ -0.91
SS18-207ENST00000577636 CSMD2Q7Z408 3487 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 C7orf72A4D263 438 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 C19orf84I3L1E1 186 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 SYT5O00445 386 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 UGT2B11O75310 529 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 UGT2B17O75795 530 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 WISP2O76076 250 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 DIRAS1O95057 198 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 GADD45GO95257 159 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 MED26O95402 600 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 CHRM4P08173 479 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 PABPC4LP0CB38 370 aaKnown RBP9.35□□□□□ -0.91
SS18-207ENST00000577636 UBTFL6P0CB48 400 aaPredicted RBP9.35□□□□□ -0.91
SS18-207ENST00000577636 ANXA8P13928 327 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 IL7RP16871 459 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 CD247P20963 164 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 IGFBP5P24593 272 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 PRKAR1BP31321 381 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 GABRA3P34903 492 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 CA7P43166 264 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 TNFSF10P50591 281 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 RPS6KA3P51812 740 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 CRYBA2P53672 197 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 IST1P53990 364 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 CDH12P55289 794 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 BTG2P78543 158 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 IL1RL1Q01638 556 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 EXOSC7Q15024 291 aaKnown RBP9.35□□□□□ -0.91
SS18-207ENST00000577636 DUSP5Q16690 384 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 DUSP7Q16829 419 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 ZSWIM7Q19AV6 140 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 LIN52Q52LA3 116 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 DCST2Q5T1A1 773 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 XKRXQ6PP77 449 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 RPTNQ6XPR3 784 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 DEF8Q6ZN54 512 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 QSOX2Q6ZRP7 698 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 LINC00471Q8N535 108 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 AMER2Q8N7J2 671 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 CHDHQ8NE62 594 aaPredicted RBP9.35□□□□□ -0.91
SS18-207ENST00000577636 OR7G1Q8NGA0 311 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 OR52P1PQ8NH57 321 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 VANGL1Q8TAA9 524 aaPredicted RBP9.35□□□□□ -0.91
SS18-207ENST00000577636 STT3BQ8TCJ2 826 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 GIPC3Q8TF64 312 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 CTHRC1Q96CG8 243 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 G6PC3Q9BUM1 346 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 ANKRA2Q9H9E1 313 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 PNO1Q9NRX1 252 aaKnown RBP9.35□□□□□ -0.91
SS18-207ENST00000577636 KRT84Q9NSB2 600 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 PNPLA3Q9NST1 481 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 C14orf105Q9NVL8 296 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 MRTO4Q9UKD2 239 aaKnown RBP9.35□□□□□ -0.91
SS18-207ENST00000577636 CLCA3PQ9Y6N3 262 aa9.35□□□□□ -0.91
SS18-207ENST00000577636 DOCK10Q96BY6 2186 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 VSTM2BA6NLU5 285 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 C17orf105B2RV13 164 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 AP3D1O14617 1153 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 CCNB2O95067 398 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 NKX2-2O95096 273 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 WDPCPO95876 746 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 CRYABP02511 175 aaKnown RBP9.34□□□□□ -0.91
SS18-207ENST00000577636 DBIP07108 87 aaKnown RBP9.34□□□□□ -0.91
SS18-207ENST00000577636 LYNP07948 512 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 CELA2AP08217 269 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 ZGLP1P0C6A0 271 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 ACP2P11117 423 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 TNFRSF1BP20333 461 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 MYF6P23409 242 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 SSTR2P30874 369 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 YAP1P46937 504 aaKnown RBP9.34□□□□□ -0.91
SS18-207ENST00000577636 ST13P50502 369 aaKnown RBP9.34□□□□□ -0.91
SS18-207ENST00000577636 SMSP52788 366 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 EMP2P54851 167 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 PSMD4P55036 377 aaKnown RBP9.34□□□□□ -0.91
SS18-207ENST00000577636 PPP2R2BQ00005 443 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 PMP22Q01453 160 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 CHRNEQ04844 493 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 MGAT2Q10469 447 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 IL18R1Q13478 541 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 ELAVL1Q15717 326 aaKnown RBP9.34□□□□□ -0.91
SS18-207ENST00000577636 NSDHLQ15738 373 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 C3AR1Q16581 482 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 ZIK1Q3SY52 487 aaPredicted RBP9.34□□□□□ -0.91
SS18-207ENST00000577636 SLC36A3Q495N2 470 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 FGD3Q5JSP0 725 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 TMEM154Q6P9G4 183 aa9.34□□□□□ -0.91
SS18-207ENST00000577636 TTC33Q6PID6 262 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms