RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FOXF2Q12947 444 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 GAGE1Q13065 139 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 GAGE4Q13068 117 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 FOXE3Q13461 319 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 CELF3Q5SZQ8 465 aaKnown RBP5.09□□□□□ -1.59
VPS53-219ENST00000576019 TTC19Q6DKK2 380 aaPredicted RBP5.09□□□□□ -1.59
VPS53-219ENST00000576019 TRPM8Q7Z2W7 1104 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 KIAA1328Q86T90 577 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 GPBP1Q86WP2 473 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 CCDC36Q8IYA8 594 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 SEMA6DQ8NFY4 1073 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 PIGCQ92535 297 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 SLC25A36Q96CQ1 311 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 COQ2Q96H96 371 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 PCED1BQ96HM7 432 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 ACCSQ96QU6 501 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 RHOXF2Q9BQY4 288 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 CHRDL1Q9BU40 450 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 SHARPINQ9H0F6 387 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 CXXC4Q9H2H0 198 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 XKR8Q9H6D3 395 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 APOBEC3GQ9HC16 384 aaKnown RBP5.09□□□□□ -1.59
VPS53-219ENST00000576019 TCF7L2Q9NQB0 619 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 SDR39U1Q9NRG7 319 aaPredicted RBP5.09□□□□□ -1.59
VPS53-219ENST00000576019 FGF21Q9NSA1 209 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 C1orf123Q9NWV4 160 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 FLRT3Q9NZU0 649 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 IL36AQ9UHA7 158 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 SIX4Q9UIU6 781 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 PIGLQ9Y2B2 252 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 PTGDR2Q9Y5Y4 395 aa5.09□□□□□ -1.59
VPS53-219ENST00000576019 HYDINQ4G0P3 5121 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 PRRC2CQ9Y520 2896 aaKnown RBP5.08□□□□□ -1.6
VPS53-219ENST00000576019 A0A087WUV0 522 aaPredicted RBP5.08□□□□□ -1.6
VPS53-219ENST00000576019 A0A1B0GTQ1 180 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 TCP11X1B4DZS4 312 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 H0YL77 283 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 M0QZ92 97 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 SH2D1BO14796 132 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 ARHGEF9O43307 516 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 SPRY3O43610 288 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 ALPIP09923 528 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 AMD1P17707 334 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 MX1P20591 662 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 NT5EP21589 574 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 NMT1P30419 496 aaKnown RBP5.08□□□□□ -1.6
VPS53-219ENST00000576019 ANP32AP39687 249 aaKnown RBP5.08□□□□□ -1.6
VPS53-219ENST00000576019 SLC11A1P49279 550 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 DNA2P51530 1060 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 RPS6P62753 249 aaKnown RBP5.08□□□□□ -1.6
VPS53-219ENST00000576019 RELQ04864 619 aaPredicted RBP5.08□□□□□ -1.6
VPS53-219ENST00000576019 SRYQ05066 204 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 ZNF33AQ06730 810 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 SPAG1Q07617 926 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 FCHO2Q0JRZ9 810 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 CNTN1Q12860 1018 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 DNAJC3Q13217 504 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 IL18Q14116 193 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 MEF2DQ14814 521 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 FBXO48Q5FWF7 155 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 SLC25A53Q5H9E4 307 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 SPANXN2Q5MJ10 180 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 MARCH8Q5T0T0 291 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 TRNP1Q6NT89 227 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 KCNIP4Q6PIL6 250 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 DPY19L2P2Q6ZN68 376 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 P4HA3Q7Z4N8 544 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 NAGSQ8N159 534 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 MAPKAPK5-AS1Q8N8E1 139 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 RPLP0P6Q8NHW5 317 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 HSD17B8Q92506 261 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 DPF1Q92782 380 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 SMARCD2Q92925 531 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 DYNLL2Q96FJ2 89 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 AKR1E2Q96JD6 320 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 C10orf90Q96M02 699 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 UHRF2Q96PU4 802 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 OMDQ99983 421 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 FUCA2Q9BTY2 467 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 QTRT1Q9BXR0 403 aaKnown RBP5.08□□□□□ -1.6
VPS53-219ENST00000576019 HAUS4Q9H6D7 363 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 GAREM1Q9H706 876 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 NEK6Q9HC98 313 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 GDF3Q9NR23 364 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 UFSP2Q9NUQ7 469 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 PISDQ9UG56 409 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 ERRFI1Q9UJM3 462 aaPredicted RBP5.08□□□□□ -1.6
VPS53-219ENST00000576019 RYR1P21817 5038 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 BAZ2BQ9UIF8 2168 aaKnown RBP5.08□□□□□ -1.6
VPS53-219ENST00000576019 SVEP1Q4LDE5 3571 aa5.08□□□□□ -1.6
VPS53-219ENST00000576019 CCDC171Q6TFL3 1326 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 LOC101059948A0A1B0GTJ6 334 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 WASHC1A8K0Z3 465 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 SUPT3HB4E1H0 165 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 INAFM1C9JVW0 142 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 MATN3O15232 486 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 ALOX15BO15296 676 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 POLR3GO15318 223 aaPredicted RBP5.07□□□□□ -1.6
VPS53-219ENST00000576019 AKR7A2O43488 359 aa5.07□□□□□ -1.6
VPS53-219ENST00000576019 CDH16O75309 829 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms