RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CD180Q99467 661 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 GDF15Q99988 308 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 WBP1LQ9NX94 342 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 CLDND1Q9NY35 253 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 SATB2Q9UPW6 733 aa21.15■□□□□ 0.98
VPS53-211ENST00000571805 XIRP2A4UGR9 3374 aa21.14■□□□□ 0.98
VPS53-211ENST00000571805 NPIPA5A0A0B4J1W7 369 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 FAM47E-STBD1D6RA91 191 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 NPIPA7E9PJI5 369 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 LDB3O75112 727 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 NPIPA8P0DM63 369 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 IFI30P13284 250 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 POLR2CP19387 275 aaPredicted RBP21.14■□□□□ 0.97
VPS53-211ENST00000571805 CFL1P23528 166 aaKnown RBP21.14■□□□□ 0.97
VPS53-211ENST00000571805 SMARCD3Q6STE5 483 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 NR2C2APQ86WQ0 139 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 TMEM52Q8NDY8 209 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 NACC2Q96BF6 587 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 ZC3HAV1LQ96H79 300 aaKnown RBP21.14■□□□□ 0.97
VPS53-211ENST00000571805 LYRM4Q9HD34 91 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 DUSP22Q9NRW4 184 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 DNAH14Q0VDD8 3507 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 FGF17O60258 216 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 ATP1B1P05026 303 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 DBPQ10586 325 aaPredicted RBP21.14■□□□□ 0.97
VPS53-211ENST00000571805 MZT2AQ6P582 158 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 ABHD13Q7L211 337 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 PRSS41Q7RTY9 318 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 C7orf61Q8IZ16 206 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 CAMKVQ8NCB2 501 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 ENKURQ8TC29 256 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 PTP4A1Q93096 173 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 RNF170Q96K19 258 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 ALG8Q9BVK2 526 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 IL21RQ9HBE5 538 aa21.14■□□□□ 0.97
VPS53-211ENST00000571805 A0A087WV62 115 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 LRRC72A6NJI9 287 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 PLOD3O60568 738 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 PAICSP22234 425 aaKnown RBP21.13■□□□□ 0.97
VPS53-211ENST00000571805 S100A1P23297 94 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 MAP2K3P46734 347 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 IL18Q14116 193 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 PRPF38BQ5VTL8 546 aaKnown RBP21.13■□□□□ 0.97
VPS53-211ENST00000571805 TRIQKQ629K1 86 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 C19orf18Q8NEA5 215 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 OR52L1Q8NGH7 329 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 TMEM106CQ9BVX2 250 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 WDR70Q9NW82 654 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 ACTR10Q9NZ32 417 aa21.13■□□□□ 0.97
VPS53-211ENST00000571805 RGS9O75916 674 aaPredicted RBP21.12■□□□□ 0.97
VPS53-211ENST00000571805 FAM157BP0CG42 384 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 MAP3K8P41279 467 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 PLAURQ03405 335 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 QPRTQ15274 297 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 SDE2Q6IQ49 451 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 THSD4Q6ZMP0 1018 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 TMPRSS11FQ6ZWK6 438 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 CDRT4Q8N9R6 151 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 DUSP18Q8NEJ0 188 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 TMEM43Q9BTV4 400 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 RANGRFQ9HD47 186 aaPredicted RBP21.12■□□□□ 0.97
VPS53-211ENST00000571805 RBFOX1Q9NWB1 397 aaKnown RBP21.12■□□□□ 0.97
VPS53-211ENST00000571805 OR6C74A6NCV1 312 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 AGRPO00253 132 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 FMO6PO60774 539 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 LAMP2P13473 410 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 HOXB2P14652 356 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 BMP7P18075 431 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 ZNF10P21506 573 aaPredicted RBP21.12■□□□□ 0.97
VPS53-211ENST00000571805 MGAT2Q10469 447 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 GARNL3Q5VVW2 1013 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 TRILQ7L0X0 811 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 TRIM48Q8IWZ4 208 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 COX18Q8N8Q8 333 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 OR10G6Q8NH81 332 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 ART5Q96L15 291 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 STACQ99469 402 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 TBX5Q99593 518 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 KCNJ15Q99712 375 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 CD93Q9NPY3 652 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 YBX2Q9Y2T7 364 aaKnown RBP21.12■□□□□ 0.97
VPS53-211ENST00000571805 RANBP2P49792 3224 aaKnown RBP21.12■□□□□ 0.97
VPS53-211ENST00000571805 FANCMQ8IYD8 2048 aa21.12■□□□□ 0.97
VPS53-211ENST00000571805 H0YGG7 62 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 LINC01565O15544 149 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 APBB3O95704 486 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 HLA-DMAP28067 261 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 MLLT3P42568 568 aaPredicted RBP21.11■□□□□ 0.97
VPS53-211ENST00000571805 MTNR1BP49286 362 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 ARF3P61204 181 aaPredicted RBP21.11■□□□□ 0.97
VPS53-211ENST00000571805 GPR18Q14330 331 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 PRICKLE4Q2TBC4 344 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 ANKRD54Q6NXT1 300 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 SLC37A3Q8NCC5 494 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 FYTTD1Q96QD9 318 aaKnown RBP21.11■□□□□ 0.97
VPS53-211ENST00000571805 SYNDIG1Q9H7V2 258 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 CMC2Q9NRP2 79 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 ARHGEF17Q96PE2 2063 aaPredicted RBP21.11■□□□□ 0.97
VPS53-211ENST00000571805 TICRRQ7Z2Z1 1910 aa21.11■□□□□ 0.97
VPS53-211ENST00000571805 CYR61O00622 381 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms