RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 OPN3Q9H1Y3 402 aaPredicted RBP18.63■□□□□ 0.57
CLN3-219ENST00000565778 CCM2LQ9NUG4 571 aaPredicted RBP18.63■□□□□ 0.57
CLN3-219ENST00000565778 PAQR5Q9NXK6 330 aaPredicted RBP18.63■□□□□ 0.57
CLN3-219ENST00000565778 DTNAQ9Y4J8 743 aa18.63■□□□□ 0.57
CLN3-219ENST00000565778 UQCRHLA0A096LP55 91 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 RNF103-CHMP3A0A140T963 221 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 PRSS51A0A1B0GVH4 220 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 C7orf72A4D263 438 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 AQP8O94778 261 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 SYNGR4O95473 234 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 FCGR2AP12318 317 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 CD1EP15812 388 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 EIF1P41567 113 aaKnown RBP18.62■□□□□ 0.57
CLN3-219ENST00000565778 KCNJ5P48544 419 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 P2RX1P51575 399 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 ZNF117Q03924 483 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 FGFBP1Q14512 234 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 PDSS1Q5T2R2 415 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 CBLN3Q6UW01 205 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 ANKRD46Q86W74 232 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 LILRA2Q8N149 483 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 ZNF610Q8N9Z0 462 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 POC1BQ8TC44 478 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 MGARPQ8TDB4 240 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 SLC39A3Q9BRY0 314 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 TMEM185BQ9H7F4 350 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 MEAF6Q9HAF1 191 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 ST6GALNAC2Q9UJ37 374 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 MCTS1Q9ULC4 181 aaKnown RBP18.62■□□□□ 0.57
CLN3-219ENST00000565778 CCDC168Q8NDH2 2452 aa18.62■□□□□ 0.57
CLN3-219ENST00000565778 MED12LQ86YW9 2145 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 TMEM120BA0PK00 339 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 TNFSF11O14788 317 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 CXCL13O43927 109 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 ERLIN1O75477 346 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 PLGP00747 810 aaPredicted RBP18.61■□□□□ 0.57
CLN3-219ENST00000565778 LINGO3P0C6S8 592 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 DNASE1P24855 282 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 PSMA4P25789 261 aaKnown RBP18.61■□□□□ 0.57
CLN3-219ENST00000565778 CD79BP40259 229 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 SLC6A8P48029 635 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 CASP9P55211 416 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 WDR4P57081 412 aaKnown RBP18.61■□□□□ 0.57
CLN3-219ENST00000565778 GPR68Q15743 365 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.61■□□□□ 0.57
CLN3-219ENST00000565778 HBMQ6B0K9 141 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 ZNF474Q6S9Z5 364 aaPredicted RBP18.61■□□□□ 0.57
CLN3-219ENST00000565778 ESPNLQ6ZVH7 1005 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 FAM214BQ7L5A3 538 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 LRRC34Q8IZ02 419 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 OR2V1Q8NHB1 315 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 RFWD2Q8NHY2 731 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 OSTF1Q92882 214 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 NINJ1Q92982 152 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 SLC35G5Q96KT7 338 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 EXD2Q9NVH0 621 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 ELOVL5Q9NYP7 299 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 PROCRQ9UNN8 238 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 MPDZO75970 2070 aa18.61■□□□□ 0.57
CLN3-219ENST00000565778 AKAP9Q99996 3911 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 ANKRD17O75179 2603 aaKnown RBP18.6■□□□□ 0.57
CLN3-219ENST00000565778 A0A0J9YW62 118 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 ADAMDEC1O15204 470 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 OIP5O43482 229 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 STX11O75558 287 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 CGAP01215 116 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 POU2F1P14859 743 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 UQCRC2P22695 453 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 S100A3P33764 101 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 CLNS1AP54105 237 aaKnown RBP18.6■□□□□ 0.57
CLN3-219ENST00000565778 CTBP2P56545 445 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 NME5P56597 212 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 CARD18P57730 90 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 PHC1P78364 1004 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 CHDHQ8NE62 594 aaPredicted RBP18.6■□□□□ 0.57
CLN3-219ENST00000565778 FBXO27Q8NI29 283 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 XAGE5Q8WWM1 108 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 TESCQ96BS2 214 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 OR51I1Q9H343 314 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 THAP1Q9NVV9 213 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 ICAM5Q9UMF0 924 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 CLEC4AQ9UMR7 237 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 PLEKHA6Q9Y2H5 1048 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 EMC9Q9Y3B6 208 aa18.6■□□□□ 0.57
CLN3-219ENST00000565778 SPG11Q96JI7 2443 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 NPIPB9F8W1W9 429 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 ZNF195O14628 629 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 FCMRO60667 390 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 SCN2BO60939 215 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 GOSR1O95249 250 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 AK1P00568 194 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 KITP10721 976 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 CD8BP10966 210 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 IL11P20809 199 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 SFTPDP35247 375 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 MAGOHP61326 146 aaKnown RBP18.59■□□□□ 0.57
CLN3-219ENST00000565778 FOXF1Q12946 379 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 POU4F3Q15319 338 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 CTU2Q2VPK5 515 aaKnown RBP18.59■□□□□ 0.57
CLN3-219ENST00000565778 NDUFAF6Q330K2 333 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms