RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	SCN3B	Q9NY72	215 aa		11.49	□□□□□ -0.57
SHMT2-233	ENST00000557529	NCDN	Q9UBB6	729 aa		11.49	□□□□□ -0.57
SHMT2-233	ENST00000557529	RALGAPA1	Q6GYQ0	2036 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	ZNF318	Q5VUA4	2279 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	LOC102723996	A0A087X1L8	192 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529		A0A0B4J2E0	115 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	SMIM31	A0A1B0GVY4	71 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529		A0A1B0GX12	115 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	CHP2	O43745	196 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	TSPAN2	O60636	221 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	LYPD3	O95274	346 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	JMJD7	P0C870	316 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	UBL4A	P11441	157 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	FPR3	P25089	353 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	POU1F1	P28069	291 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	STAT5A	P42229	794 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	OMP	P47874	163 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	GSS	P48637	474 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	IDH2	P48735	452 aa	Known RBP	11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	RNF144A	P50876	292 aa	Predicted RBP	11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	CDH15	P55291	814 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	FOXL2	P58012	376 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	COPZ1	P61923	177 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	NCF4	Q15080	339 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	FNDC7	Q5VTL7	733 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	BROX	Q5VW32	411 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	SLX4IP	Q5VYV7	408 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	LAIR2	Q6ISS4	152 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529		Q6ZPB1	254 aa	Predicted RBP	11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	RASSF6	Q6ZTQ3	369 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	P3H2	Q8IVL5	708 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	GALNT6	Q8NCL4	622 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	APCDD1L	Q8NCL9	501 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	FAM71C	Q8NEG0	241 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	BPIFB6	Q8NFQ5	453 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	RHOXF1	Q8NHV9	184 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	WDR36	Q8NI36	951 aa	Known RBP	11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	TMEM255B	Q8WV15	326 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	OMA1	Q96E52	524 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	DEPDC7	Q96QD5	511 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	ADO	Q96SZ5	270 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	WDR77	Q9BQA1	342 aa	Predicted RBP	11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	PRSS27	Q9BQR3	290 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	NRSN2	Q9GZP1	204 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	VCX3A	Q9NNX9	186 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	SELENON	Q9NZV5	590 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	RPS6KB2	Q9UBS0	482 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	RNF6	Q9Y252	685 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	TMEM5	Q9Y2B1	443 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	B3GALT1	Q9Y5Z6	326 aa		11.48	□□□□□ -0.57
SHMT2-233	ENST00000557529	CCDC187	A0A096LP49	1063 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	TRBV11-1	A0A0K0K1C0	115 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529		A0A1B0GWA3	101 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529		A0A1W2PQD3	144 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	GTPBP1	O00178	669 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	PRKN	O60260	465 aa	Predicted RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	MRPS14	O60783	128 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	CS	O75390	466 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	STK17B	O94768	372 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	MT-CO3	P00414	261 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	IGHE	P01854	428 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	ITIH1	P19827	911 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	ABCD3	P28288	659 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	FMO3	P31513	532 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	ETV5	P41161	510 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	RBM34	P42696	430 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	SLC26A5	P58743	744 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	EFR3A	Q14156	821 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	FAM199X	Q6PEV8	388 aa	Predicted RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	ULK3	Q6PHR2	472 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	PRICKLE2	Q7Z3G6	844 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	NRM	Q8IXM6	262 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	CDK20	Q8IZL9	346 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	OR2Y1	Q8NGV0	311 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	RNF217	Q8TC41	542 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	DNAJA4	Q8WW22	397 aa	Predicted RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	TMEM239	Q8WW34	195 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	TRUB1	Q8WWH5	349 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	PMEPA1	Q969W9	287 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	FAM46A	Q96IP4	442 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	CCNL2	Q96S94	520 aa	Predicted RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	CCNB1IP1	Q9NPC3	277 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	RASSF1	Q9NS23	344 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	PISD	Q9UG56	409 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	ZNF223	Q9UK11	482 aa	Predicted RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	MED31	Q9Y3C7	131 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	PTRH2	Q9Y3E5	179 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	PCDHGA3	Q9Y5H0	932 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	CACNA1H	O95180	2353 aa		11.47	□□□□□ -0.57
SHMT2-233	ENST00000557529	COL27A1	Q8IZC6	1860 aa	Predicted RBP	11.46	□□□□□ -0.57
SHMT2-233	ENST00000557529	CDC14C	A4D256	554 aa		11.46	□□□□□ -0.57
SHMT2-233	ENST00000557529	OR6C70	A6NIJ9	312 aa		11.46	□□□□□ -0.57
SHMT2-233	ENST00000557529	ALG1L2	C9J202	215 aa		11.46	□□□□□ -0.57
SHMT2-233	ENST00000557529	ZNF264	O43296	627 aa		11.46	□□□□□ -0.57
SHMT2-233	ENST00000557529	KLF4	O43474	513 aa		11.46	□□□□□ -0.57
SHMT2-233	ENST00000557529	WBP4	O75554	376 aa	Known RBP	11.46	□□□□□ -0.57
SHMT2-233	ENST00000557529	ZFAND5	O76080	213 aa		11.46	□□□□□ -0.57
SHMT2-233	ENST00000557529	OR6B1	O95007	311 aa		11.46	□□□□□ -0.57
SHMT2-233	ENST00000557529	SOX14	O95416	240 aa		11.46	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms