RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 ANKLE1Q8NAG6 615 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 SMARCD2Q92925 531 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 B3GAT2Q9NPZ5 323 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 ACSS1Q9NUB1 689 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-212ENST00000546744 DZANK1Q9NVP4 752 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 SLC35A3Q9Y2D2 325 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 CDK5RAP2Q96SN8 1893 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 TBC1D3DA0A087WVF3 549 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 TBC1D3IA0A087WXS9 549 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 TBC1D3EA0A087X179 549 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 SNRPGP15A8MWD9 76 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 TBC1D3LB9A6J9 549 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 MT-ND4P03905 459 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 ATP1B1P05026 303 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 TBC1D3HP0C7X1 549 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 ZP3P21754 424 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 PDX1P52945 283 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 SEC61A1P61619 476 aaKnown RBP12.06□□□□□ -0.48
PTCH1-212ENST00000546744 TBPL1P62380 186 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 RAB1AP62820 205 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 TBC1D3CQ6IPX1 549 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 KCNIP4Q6PIL6 250 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 TBC1D3Q8IZP1 549 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-212ENST00000546744 SLC2A12Q8TD20 617 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 FYTTD1Q96QD9 318 aaKnown RBP12.06□□□□□ -0.48
PTCH1-212ENST00000546744 IL17CQ9P0M4 197 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 SLC22A7Q9Y694 548 aa12.06□□□□□ -0.48
PTCH1-212ENST00000546744 HSBP1L1C9JCN9 74 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 FADS1O60427 444 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 RNH1P13489 461 aaKnown RBP12.05□□□□□ -0.48
PTCH1-212ENST00000546744 GNSP15586 552 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 TMEM41BQ5BJD5 291 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 ARL14EPQ8N8R7 260 aaPredicted RBP12.05□□□□□ -0.48
PTCH1-212ENST00000546744 AUTS2Q8WXX7 1259 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 HOXB13Q92826 284 aaPredicted RBP12.05□□□□□ -0.48
PTCH1-212ENST00000546744 SLC25A36Q96CQ1 311 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 SAMD8Q96LT4 415 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 SEC22CQ9BRL7 303 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 C1GALT1Q9NS00 363 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 AK6Q9Y3D8 172 aaKnown RBP12.05□□□□□ -0.48
PTCH1-212ENST00000546744 CORINQ9Y5Q5 1042 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 IGKV6D-21A0A0A0MT36 114 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 TSPAN11A1L157 253 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 LDB2O43679 373 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 CSTAP01040 98 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 PCCBP05166 539 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 GPR4P46093 362 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 MECP2P51608 486 aaKnown RBP12.05□□□□□ -0.48
PTCH1-212ENST00000546744 CXADRP78310 365 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 PTPRCAPQ14761 206 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 NXNL2Q5VZ03 156 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 SPRYD7Q5W111 196 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 PRSS42Q7Z5A4 293 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 OR52E2Q8NGJ4 325 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 SMPDL3BQ92485 455 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 TGM7Q96PF1 710 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 C12orf57Q99622 126 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 ACPTQ9BZG2 426 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 LIN7BQ9HAP6 207 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 C2orf78A6NCI8 922 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 GPR137BO60478 399 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 ZNF254O75437 659 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 IFNGR1P15260 489 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 SELPP16109 830 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 STK19P49842 368 aaPredicted RBP12.05□□□□□ -0.48
PTCH1-212ENST00000546744 CLCNKAP51800 687 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 SORDQ00796 357 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 BDH1Q02338 343 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 PPA1Q15181 289 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 H3F3CQ6NXT2 135 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 DEFB128Q7Z7B8 93 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 FAM129CQ86XR2 697 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 IQCF1Q8N6M8 205 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 TM9SF4Q92544 642 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 MAL2Q969L2 176 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 GAL3ST4Q96RP7 486 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 BTBD2Q9BX70 525 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 TMEM38AQ9H6F2 299 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 TXNRD2Q9NNW7 524 aa12.05□□□□□ -0.48
PTCH1-212ENST00000546744 A8MXE2 369 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 SYT5O00445 386 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 HLA-AP01891 365 aaKnown RBP12.04□□□□□ -0.48
PTCH1-212ENST00000546744 HAPLN1P10915 354 aaPredicted RBP12.04□□□□□ -0.48
PTCH1-212ENST00000546744 PAN3Q58A45 887 aaKnown RBP12.04□□□□□ -0.48
PTCH1-212ENST00000546744 TMEM244Q5VVB8 128 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 SKA3Q8IX90 412 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 RAB7BQ96AH8 199 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 TMEM106CQ9BVX2 250 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 RNF32Q9H0A6 362 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 MVB12BQ9H7P6 319 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 A0A0G2JN53 185 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 TRABD2BA6NFA1 517 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 CD1EP15812 388 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 ELK1P19419 428 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 HLA-FP30511 346 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 MAGEB1P43366 347 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 SLC6A9P48067 706 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 SOHLH1Q5JUK2 328 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 SLC29A4Q7RTT9 530 aa12.04□□□□□ -0.48
PTCH1-212ENST00000546744 PITX2Q99697 317 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms