RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 EMBQ6PCB8 327 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 BEND4Q6ZU67 534 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 LILRA2Q8N149 483 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 WFDC11Q8NEX6 87 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 OR7A2PQ8NGA2 310 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 OR2W6PQ8NHA6 318 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 PPP1R14CQ8TAE6 165 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 PHOSPHO1Q8TCT1 267 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 TCP10LQ8TDR4 215 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 CDS1Q92903 461 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 CPNE4Q96A23 557 aaPredicted RBP11.76□□□□□ -0.53
RTN3-213ENST00000543552 TUBGCP3Q96CW5 907 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 OTUB1Q96FW1 271 aaPredicted RBP11.76□□□□□ -0.53
RTN3-213ENST00000543552 POM121Q96HA1 1249 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 ADGRG7Q96K78 797 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 C18orf12Q96KH6 178 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 KLHL15Q96M94 604 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 CCL19Q99731 98 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 BHLHE41Q9C0J9 482 aaPredicted RBP11.76□□□□□ -0.53
RTN3-213ENST00000543552 UBTD1Q9HAC8 227 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 SIRT3Q9NTG7 399 aaPredicted RBP11.76□□□□□ -0.53
RTN3-213ENST00000543552 SLC17A7Q9P2U7 560 aa11.76□□□□□ -0.53
RTN3-213ENST00000543552 A0A1W2PPR1 153 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 GTPBP1O00178 669 aaKnown RBP11.75□□□□□ -0.53
RTN3-213ENST00000543552 CFLARO15519 480 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 SPAG7O75391 227 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 SLU7O95391 586 aaKnown RBP11.75□□□□□ -0.53
RTN3-213ENST00000543552 LINGO3P0C6S8 592 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 LAMP1P11279 417 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 PSMA4P25789 261 aaKnown RBP11.75□□□□□ -0.53
RTN3-213ENST00000543552 SLC6A8P48029 635 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 CARD18P57730 90 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 PTGR1Q14914 329 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 RNPS1Q15287 305 aaKnown RBP11.75□□□□□ -0.53
RTN3-213ENST00000543552 CTU2Q2VPK5 515 aaKnown RBP11.75□□□□□ -0.53
RTN3-213ENST00000543552 BEX5Q5H9J7 111 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 C6orf136Q5SQH8 315 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 DCST2Q5T1A1 773 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 IL23RQ5VWK5 629 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 ZCCHC23Q6ZST2 131 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 ZNF550Q7Z398 422 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 ZAR1Q86SH2 424 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 CXorf67Q86X51 503 aaPredicted RBP11.75□□□□□ -0.53
RTN3-213ENST00000543552 KIRREL3Q8IZU9 778 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 COQ8BQ96D53 544 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 ZC3HAV1LQ96H79 300 aaKnown RBP11.75□□□□□ -0.53
RTN3-213ENST00000543552 ZIM3Q96PE6 472 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 TACO1Q9BSH4 297 aaKnown RBP11.75□□□□□ -0.53
RTN3-213ENST00000543552 C1orf50Q9BV19 199 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 OR10A4Q9H209 315 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 TMEM185BQ9H7F4 350 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 ANKZF1Q9H8Y5 726 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 GP6Q9HCN6 339 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 CLEC4AQ9UMR7 237 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 ACTL7BQ9Y614 415 aa11.75□□□□□ -0.53
RTN3-213ENST00000543552 GPC6Q9Y625 555 aaPredicted RBP11.75□□□□□ -0.53
RTN3-213ENST00000543552 DUXAA6NLW8 204 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 SIAH2O43255 324 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 SKAP2O75563 359 aaPredicted RBP11.74□□□□□ -0.53
RTN3-213ENST00000543552 SNUPNO95149 360 aaKnown RBP11.74□□□□□ -0.53
RTN3-213ENST00000543552 C6orf47O95873 294 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 AK1P00568 194 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 BPGMP07738 259 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 INHBBP09529 407 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 AGTR1P30556 359 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 SFTPDP35247 375 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 SOAT1P35610 550 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 P2RX1P51575 399 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 ATP12AP54707 1039 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 C21orf58P58505 322 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 VSNL1P62760 191 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 ZNF117Q03924 483 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 FOXF1Q12946 379 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 CD226Q15762 336 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 ZNF239Q16600 458 aaKnown RBP11.74□□□□□ -0.53
RTN3-213ENST00000543552 SMU1Q2TAY7 513 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 KLHL26Q53HC5 615 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 Q5PR19 223 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 TMEM201Q5SNT2 666 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 PRSS57Q6UWY2 283 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 TOR1AIP2Q8NFQ8 470 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 OSTF1Q92882 214 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 DUSP26Q9BV47 211 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 CXorf36Q9H7Y0 433 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 FBXO34Q9NWN3 711 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 NOP53Q9NZM5 478 aaKnown RBP11.74□□□□□ -0.53
RTN3-213ENST00000543552 GIMAP2Q9UG22 337 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 GPR52Q9Y2T5 361 aa11.74□□□□□ -0.53
RTN3-213ENST00000543552 A0A0J9YW62 118 aa11.73□□□□□ -0.53
RTN3-213ENST00000543552 TMCC2O75069 709 aa11.73□□□□□ -0.53
RTN3-213ENST00000543552 UBL4AP11441 157 aa11.73□□□□□ -0.53
RTN3-213ENST00000543552 PSMB1P20618 241 aaKnown RBP11.73□□□□□ -0.53
RTN3-213ENST00000543552 SLC7A1P30825 629 aa11.73□□□□□ -0.53
RTN3-213ENST00000543552 SELENBP1Q13228 472 aa11.73□□□□□ -0.53
RTN3-213ENST00000543552 CBFBQ13951 182 aa11.73□□□□□ -0.53
RTN3-213ENST00000543552 ANKRD34AQ69YU3 496 aa11.73□□□□□ -0.53
RTN3-213ENST00000543552 STAC2Q6ZMT1 411 aa11.73□□□□□ -0.53
RTN3-213ENST00000543552 NUDCD3Q8IVD9 361 aa11.73□□□□□ -0.53
RTN3-213ENST00000543552 RIMKLAQ8IXN7 391 aa11.73□□□□□ -0.53
RTN3-213ENST00000543552 SLC43A2Q8N370 569 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms