RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 S1PR5Q9H228 398 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 A0A087WV48 116 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 SLITRK5O94991 958 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 PAHP00439 452 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 IL7P13232 177 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 IFNA8P32881 189 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 TNFRSF4P43489 277 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 OR2B6P58173 313 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 OR10A3P58181 314 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 ZNF45Q02386 682 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 MLLT11Q13015 90 aaPredicted RBP15.68■□□□□ 0.1
USP28-208ENST00000540438 TMEM201Q5SNT2 666 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 C19orf48Q6RUI8 117 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 PAMR1Q6UXH9 720 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 TMEM151BQ8IW70 566 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 NATD1Q8N6N6 113 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 PRSS27Q9BQR3 290 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 MTHFD2LQ9H903 347 aaPredicted RBP15.68■□□□□ 0.1
USP28-208ENST00000540438 MEPEQ9NQ76 525 aaPredicted RBP15.68■□□□□ 0.1
USP28-208ENST00000540438 DZANK1Q9NVP4 752 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 SIDT1Q9NXL6 827 aaKnown RBP15.68■□□□□ 0.1
USP28-208ENST00000540438 PTGFRNQ9P2B2 879 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 TNFRSF10DQ9UBN6 386 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 CBLCQ9ULV8 474 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 ADAM18Q9Y3Q7 739 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 TNRC18O15417 2968 aaPredicted RBP15.68■□□□□ 0.1
USP28-208ENST00000540438 GPR89AB7ZAQ6 455 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 J3QLW9 94 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 IGKV1D-16P01601 117 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 ALOX5P09917 674 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 GPR89BP0CG08 455 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 ZNF19P17023 458 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 PRKCDQ05655 676 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 ZNF181Q2M3W8 571 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 OR4K13Q8NH42 304 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 UFD1Q92890 307 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 ABHD8Q96I13 439 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 KCTD7Q96MP8 289 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 MAP3K3Q99759 626 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 PSD2Q9BQI7 771 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 NXF2Q9GZY0 626 aaKnown RBP15.68■□□□□ 0.1
USP28-208ENST00000540438 RMI1Q9H9A7 625 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 CMAHPQ9Y471 501 aa15.68■□□□□ 0.1
USP28-208ENST00000540438 TAF4O00268 1085 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 CHST10O43529 356 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 IFNA16P05015 189 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 NGFRP08138 427 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 PIPP12273 146 aaPredicted RBP15.67■□□□□ 0.1
USP28-208ENST00000540438 RFX2P48378 723 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 PSPHP78330 225 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 E2F1Q01094 437 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 GNA13Q14344 377 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 MEDAGQ5VYS4 303 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 PRR22Q8IZ63 422 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 OR2T33Q8NG76 320 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 SFXN5Q8TD22 340 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 TMEM239Q8WW34 195 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 EFHD2Q96C19 240 aaPredicted RBP15.67■□□□□ 0.1
USP28-208ENST00000540438 ZMYND19Q96E35 227 aaPredicted RBP15.67■□□□□ 0.1
USP28-208ENST00000540438 SLC30A4O14863 429 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 APOA1P02647 267 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 SLC2A2P11168 524 aaPredicted RBP15.67■□□□□ 0.1
USP28-208ENST00000540438 DUSP8Q13202 625 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 HTR4Q13639 388 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 IDNKQ5T6J7 187 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 OR2L13Q8N349 312 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 SDR9C7Q8NEX9 313 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 NEIL3Q8TAT5 605 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 GFM1Q96RP9 751 aaKnown RBP15.67■□□□□ 0.1
USP28-208ENST00000540438 SERINC2Q96SA4 455 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 LRIT1Q9P2V4 623 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 HEBP2Q9Y5Z4 205 aa15.67■□□□□ 0.1
USP28-208ENST00000540438 A6NCN8 305 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 C2CD4DB7Z1M9 353 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 ASNA1O43681 348 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 PAICSP22234 425 aaKnown RBP15.66■□□□□ 0.1
USP28-208ENST00000540438 EFNB1P98172 346 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 CRYZQ08257 329 aaKnown RBP15.66■□□□□ 0.1
USP28-208ENST00000540438 IL18Q14116 193 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 CRMP1Q14194 572 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 ZNF628Q5EBL2 1059 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 ASB18Q6ZVZ8 466 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 NR2C2APQ86WQ0 139 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 FGF11Q92914 225 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 TTYH2Q9BSA4 534 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 NRSN2Q9GZP1 204 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 LYARQ9NX58 379 aaKnown RBP15.66■□□□□ 0.1
USP28-208ENST00000540438 FLRT3Q9NZU0 649 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 ANKRD61A6NGH8 418 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 STX11O75558 287 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 IGHV4-34P06331 123 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 CHRNB1P11230 501 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 ALAS2P22557 587 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 SHC1P29353 583 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 RPS27P42677 84 aaKnown RBP15.66■□□□□ 0.1
USP28-208ENST00000540438 GFERP55789 205 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 KLHL22Q53GT1 634 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 RASSF6Q6ZTQ3 369 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 MBOAT2Q6ZWT7 520 aa15.66■□□□□ 0.1
USP28-208ENST00000540438 ABHD13Q7L211 337 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms