RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CBLN3Q6UW01 205 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 P4HA3Q7Z4N8 544 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 METTL25Q8N6Q8 603 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 ZBTB8AQ96BR9 441 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 NEURL3Q96EH8 262 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 LRRC46Q96FV0 321 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 ZNF845Q96IR2 970 aaPredicted RBP13.32□□□□□ -0.28
USP28-204ENST00000537642 RNF145Q96MT1 663 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 OR52B2Q96RD2 323 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 ZNF559Q9BR84 538 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 INPP5KQ9BT40 448 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 PINK1Q9BXM7 581 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 ACBD3Q9H3P7 528 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 SLC24A3Q9HC58 644 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 FOXD3Q9UJU5 478 aaPredicted RBP13.32□□□□□ -0.28
USP28-204ENST00000537642 CARD8Q9Y2G2 431 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 DTNAQ9Y4J8 743 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 TACC2O95359 2948 aa13.32□□□□□ -0.28
USP28-204ENST00000537642 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 FCMRO60667 390 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 TNFSF13O75888 250 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 AK1P00568 194 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 PGRP06401 933 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 IDO1P14902 403 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 CDKN2CP42773 168 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 KIR2DL3P43628 341 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 GPR68Q15743 365 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 NDUFAF6Q330K2 333 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 PDCD4Q53EL6 469 aaKnown RBP13.31□□□□□ -0.28
USP28-204ENST00000537642 LURAP1LQ8IV03 231 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 ZNF614Q8N883 585 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 RAB8BQ92930 207 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 OR52E6Q96RD3 313 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 ZBTB18Q99592 522 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 SLC35A5Q9BS91 424 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 NMUR2Q9GZQ4 415 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 ZNF350Q9GZX5 532 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 EXD2Q9NVH0 621 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 KCNE5Q9UJ90 142 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 ICAM5Q9UMF0 924 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 ZNF175Q9Y473 711 aa13.31□□□□□ -0.28
USP28-204ENST00000537642 CENPVL1A0A0U1RR11 272 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 A0A1W2PNV4 684 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 CCDC154A6NI56 674 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 H3BNH8 94 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 EIF1AYO14602 144 aaKnown RBP13.3□□□□□ -0.28
USP28-204ENST00000537642 STX11O75558 287 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 OPN1LWP04000 364 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 H2AFXP16104 143 aaPredicted RBP13.3□□□□□ -0.28
USP28-204ENST00000537642 CHI3L1P36222 383 aaPredicted RBP13.3□□□□□ -0.28
USP28-204ENST00000537642 PEX19P40855 299 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 P2RX1P51575 399 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 SUMO3P55854 103 aaPredicted RBP13.3□□□□□ -0.28
USP28-204ENST00000537642 RPS3AP61247 264 aaKnown RBP13.3□□□□□ -0.28
USP28-204ENST00000537642 RAC1P63000 192 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 FUT5Q11128 374 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 PON3Q15166 354 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 ZNF141Q15928 474 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 GSTA3Q16772 222 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 CTU2Q2VPK5 515 aaKnown RBP13.3□□□□□ -0.28
USP28-204ENST00000537642 PDZK1Q5T2W1 519 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 OR2A2Q6IF42 318 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 EPGNQ6UW88 154 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 HDXQ7Z353 690 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 C16orf62Q7Z3J2 963 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 LUZP2Q86TE4 346 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 ZZZ3Q8IYH5 903 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 GLB1L3Q8NCI6 653 aaPredicted RBP13.3□□□□□ -0.28
USP28-204ENST00000537642 FNDC9Q8TBE3 224 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 XAGE5Q8WWM1 108 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 ZNF524Q96C55 264 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 ADGRG7Q96K78 797 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 C7orf26Q96N11 449 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 PANX1Q96RD7 426 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 PIGMQ9H3S5 423 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 SLCO1B3Q9NPD5 702 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 CRIM1Q9NZV1 1036 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 STOML1Q9UBI4 398 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 MKLN1Q9UL63 735 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 USH1CQ9Y6N9 552 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 SPG11Q96JI7 2443 aa13.3□□□□□ -0.28
USP28-204ENST00000537642 PRAMEF27A3QJZ7 478 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 SERINC4A6NH21 518 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 GTPBP1O00178 669 aaKnown RBP13.29□□□□□ -0.28
USP28-204ENST00000537642 UBDO15205 165 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 DIAPH2O60879 1101 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 SLC22A3O75751 556 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 UGT2B17O75795 530 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 NUDT14O95848 222 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 AGR2O95994 175 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 GSNP06396 782 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 CRHP06850 196 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 UBL4AP11441 157 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 CAPN3P20807 821 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 IL11P20809 199 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 EIF1AXP47813 144 aaKnown RBP13.29□□□□□ -0.28
USP28-204ENST00000537642 KHKP50053 298 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 EEF1A1P68104 462 aaKnown RBP13.29□□□□□ -0.28
USP28-204ENST00000537642 FOXF1Q12946 379 aa13.29□□□□□ -0.28
USP28-204ENST00000537642 TOMM34Q15785 309 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms