RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	P2RX1	P51575	399 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	SLC7A2	P52569	658 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	EEFSEC	P57772	596 aa	Known RBP	18.87	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF117	Q03924	483 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	SKP2	Q13309	424 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	LARS2	Q15031	903 aa	Known RBP	18.87	■□□□□ 0.61
CD44-222	ENST00000526025	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	18.87	■□□□□ 0.61
CD44-222	ENST00000526025	OR5M10	Q6IEU7	315 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	TRIL	Q7L0X0	811 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF605	Q86T29	641 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	GATS	Q8NAP1	163 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	18.87	■□□□□ 0.61
CD44-222	ENST00000526025	OR52P1P	Q8NH57	321 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	SLC35B4	Q969S0	331 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	C1GALT1C1	Q96EU7	318 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF607	Q96SK3	696 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	QRSL1	Q9H0R6	528 aa	Known RBP	18.87	■□□□□ 0.61
CD44-222	ENST00000526025	MED11	Q9P086	117 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF232	Q9UNY5	417 aa		18.87	■□□□□ 0.61
CD44-222	ENST00000526025	ESPL1	Q14674	2120 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	C7orf72	A4D263	438 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	OR14I1	A6ND48	311 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	ANKUB1	A6NFN9	424 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	GTPBP1	O00178	669 aa	Known RBP	18.86	■□□□□ 0.61
CD44-222	ENST00000526025	NME4	O00746	187 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	HCRTR2	O43614	444 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	SERPINB7	O75635	380 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	PABPC4L	P0CB38	370 aa	Known RBP	18.86	■□□□□ 0.61
CD44-222	ENST00000526025	DPP4	P27487	766 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	PRKAR1B	P31321	381 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	SPATS1	Q496A3	300 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	NHSL2	Q5HYW2	709 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	ARHGAP11A	Q6P4F7	1023 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	C16orf89	Q6UX73	402 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	CCDC80	Q76M96	950 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	PATL1	Q86TB9	770 aa	Known RBP	18.86	■□□□□ 0.61
CD44-222	ENST00000526025	ATCAY	Q86WG3	371 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	GRAMD2A	Q8IUY3	354 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	FAM83F	Q8NEG4	500 aa	Predicted RBP	18.86	■□□□□ 0.61
CD44-222	ENST00000526025	OR2T12	Q8NG77	320 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	DEFB127	Q9H1M4	99 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	18.86	■□□□□ 0.61
CD44-222	ENST00000526025	ARMC7	Q9H6L4	198 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	TMEM181	Q9P2C4	612 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	DKKL1	Q9UK85	242 aa		18.86	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF443	Q9Y2A4	671 aa	Predicted RBP	18.86	■□□□□ 0.61
CD44-222	ENST00000526025	TRGV5	A0A0B4J1U4	118 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	CDHR4	A6H8M9	788 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	PRORSD1P	A6NEY8	169 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	C17orf51	A8MQB3	221 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	AQP7	O14520	342 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	TRAPPC6A	O75865	159 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	CELA3A	P09093	270 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	T-ENOL	P0DO92	83 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	EEF1A1	P68104	462 aa	Known RBP	18.85	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	18.85	■□□□□ 0.61
CD44-222	ENST00000526025	GFRAL	Q6UXV0	394 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF440	Q8IYI8	595 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	OR5W2	Q8NH69	310 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	NEIL3	Q8TAT5	605 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	ALG2	Q9H553	416 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	EVA1A	Q9H8M9	152 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	TAS2R10	Q9NYW0	307 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	CARD8	Q9Y2G2	431 aa		18.85	■□□□□ 0.61
CD44-222	ENST00000526025	CCT8L1P	A6NM43	557 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	LINC01387	J3KSC0	135 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	ETV2	O00321	342 aa	Predicted RBP	18.84	■□□□□ 0.61
CD44-222	ENST00000526025	ZIC3	O60481	467 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	GCK	P35557	465 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	CPOX	P36551	454 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	SLC6A8	P48029	635 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	LIPE	Q05469	1076 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	RBPJ	Q06330	500 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	CBFB	Q13951	182 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	TMEM44	Q2T9K0	475 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	EIPR1	Q53HC9	387 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	ZNF311	Q5JNZ3	666 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	MRPL2	Q5T653	305 aa	Known RBP	18.84	■□□□□ 0.61
CD44-222	ENST00000526025	DHRS4L2	Q6PKH6	230 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	CBLN3	Q6UW01	205 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	CHERP	Q8IWX8	916 aa	Known RBP	18.84	■□□□□ 0.61
CD44-222	ENST00000526025	MICU2	Q8IYU8	434 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	TNIP2	Q8NFZ5	429 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	ZBTB8A	Q96BR9	441 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	SH3YL1	Q96HL8	342 aa	Predicted RBP	18.84	■□□□□ 0.61
CD44-222	ENST00000526025	C1orf21	Q9H246	121 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	DNAJB12	Q9NXW2	375 aa	Known RBP	18.84	■□□□□ 0.61
CD44-222	ENST00000526025	LIPG	Q9Y5X9	500 aa		18.84	■□□□□ 0.61
CD44-222	ENST00000526025	ELOVL7	A1L3X0	281 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025		B2RBV5	119 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	FAM47E-STBD1	D6RA91	191 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	FAAH	O00519	579 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	OIP5	O43482	229 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	CDC40	O60508	579 aa	Known RBP eCLIP	18.83	■□□□□ 0.6
CD44-222	ENST00000526025	WISP2	O76076	250 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	UBTFL6	P0CB48	400 aa	Predicted RBP	18.83	■□□□□ 0.6
CD44-222	ENST00000526025	ZNF17	P17021	662 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	CHM	P24386	653 aa		18.83	■□□□□ 0.6
CD44-222	ENST00000526025	ZNF41	P51814	821 aa	Predicted RBP	18.83	■□□□□ 0.6
CD44-222	ENST00000526025	DLX5	P56178	289 aa		18.83	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms