RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 RNF220Q5VTB9 566 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 DHRS4L2Q6PKH6 230 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 ENPP6Q6UWR7 440 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 VTCN1Q7Z7D3 282 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 KRT73Q86Y46 540 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 ARMC8Q8IUR7 673 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 PEX5LQ8IYB4 626 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 CLIP4Q8N3C7 705 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 ZNF614Q8N883 585 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 GATSQ8NAP1 163 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 FAM71CQ8NEG0 241 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 BHLHE22Q8NFJ8 381 aaPredicted RBP13.98□□□□□ -0.17
LSM1-203ENST00000520755 CPT1CQ8TCG5 803 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 NSMCE2Q96MF7 247 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 FRMD6Q96NE9 622 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 ZNF607Q96SK3 696 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 KLHDC3Q9BQ90 382 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 WFDC6Q9BQY6 131 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 ANGPTL4Q9BY76 406 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 DCAF13Q9NV06 445 aaKnown RBP13.98□□□□□ -0.17
LSM1-203ENST00000520755 OLAHQ9NV23 265 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 ASF1BQ9NVP2 202 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 SEC14L3Q9UDX4 400 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 DTNAQ9Y4J8 743 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 KALRNO60229 2985 aa13.98□□□□□ -0.17
LSM1-203ENST00000520755 MPDZO75970 2070 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 ANKRD33BA6NCL7 494 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 SERINC4A6NH21 518 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 SCDO00767 359 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 CRYABP02511 175 aaKnown RBP13.97□□□□□ -0.17
LSM1-203ENST00000520755 TNFRSF1BP20333 461 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 PRKAR1BP31321 381 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 KCNJ5P48544 419 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 LIN52Q52LA3 116 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 ZNF311Q5JNZ3 666 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 C1orf146Q5VVC0 180 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 SLC30A6Q6NXT4 461 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 EIF3MQ7L2H7 374 aaKnown RBP13.97□□□□□ -0.17
LSM1-203ENST00000520755 MARCH3Q86UD3 253 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 PACS2Q86VP3 889 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 ZFP62Q8NB50 900 aaPredicted RBP13.97□□□□□ -0.17
LSM1-203ENST00000520755 OIT3Q8WWZ8 545 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 ARSGQ96EG1 525 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 HSH2DQ96JZ2 352 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 ZNF597Q96LX8 424 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 RAB3IPQ96QF0 476 aaPredicted RBP13.97□□□□□ -0.17
LSM1-203ENST00000520755 PINK1Q9BXM7 581 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 TTTY12Q9BZ98 90 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 TBL1XR1Q9BZK7 514 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 HOXD1Q9GZZ0 328 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 TSPAN10Q9H1Z9 355 aaPredicted RBP13.97□□□□□ -0.17
LSM1-203ENST00000520755 RLIMQ9NVW2 624 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 DNAJB12Q9NXW2 375 aaKnown RBP13.97□□□□□ -0.17
LSM1-203ENST00000520755 BOKQ9UMX3 212 aaPredicted RBP13.97□□□□□ -0.17
LSM1-203ENST00000520755 V9GYQ6 96 aa13.97□□□□□ -0.17
LSM1-203ENST00000520755 TCRBV3S1A0A5B6 114 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 CDHR4A6H8M9 788 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 FAM166BA8MTA8 275 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 GNB5O14775 395 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 FRS3O43559 492 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 ADAM11O75078 769 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 SERPINB7O75635 380 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 CIB2O75838 187 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 SNX4O95219 450 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 ZNF682O95780 498 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 ANGPTL1O95841 491 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 SEMG1P04279 462 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 HPGDP15428 266 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 IL7RP16871 459 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 ZNF24P17028 368 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 ADH7P40394 386 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 CLK3P49761 638 aaKnown RBP13.96□□□□□ -0.17
LSM1-203ENST00000520755 ALDH6A1Q02252 535 aaKnown RBP13.96□□□□□ -0.17
LSM1-203ENST00000520755 ZNF117Q03924 483 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 C19orf57Q0VDD7 668 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 SNTA1Q13424 505 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 ELOAQ14241 798 aaKnown RBP13.96□□□□□ -0.17
LSM1-203ENST00000520755 KPNB1Q14974 876 aaKnown RBP13.96□□□□□ -0.17
LSM1-203ENST00000520755 MTX3Q5HYI7 312 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 RNFT1Q5M7Z0 435 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 LACC1Q8IV20 430 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 EID3Q8N140 333 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 ZNF527Q8NB42 609 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 OR4D11Q8NGI4 311 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 CNOT9Q92600 299 aaKnown RBP13.96□□□□□ -0.17
LSM1-203ENST00000520755 RNF145Q96MT1 663 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 ARHGDIGQ99819 225 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 SPATA5L1Q9BVQ7 753 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 DENND2DQ9H6A0 471 aaPredicted RBP13.96□□□□□ -0.17
LSM1-203ENST00000520755 ZFP64Q9NPA5 681 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 AGPAT4Q9NRZ5 378 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 IFT52Q9Y366 437 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 WIF1Q9Y5W5 379 aa13.96□□□□□ -0.17
LSM1-203ENST00000520755 SPTA1P02549 2419 aa13.95□□□□□ -0.18
LSM1-203ENST00000520755 LRRC3CA6NJW4 275 aa13.95□□□□□ -0.18
LSM1-203ENST00000520755 AQP12BA6NM10 295 aa13.95□□□□□ -0.18
LSM1-203ENST00000520755 ACOT7O00154 380 aa13.95□□□□□ -0.18
LSM1-203ENST00000520755 SYT5O00445 386 aa13.95□□□□□ -0.18
LSM1-203ENST00000520755 TFECO14948 347 aaPredicted RBP13.95□□□□□ -0.18
LSM1-203ENST00000520755 TRIM3O75382 744 aaPredicted RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms